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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_013587708.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
Trihelix |
Protein Properties |
Length: 256aa MW: 28789.2 Da PI: 5.8305 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013587708.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 44.5 | 4.1e-14 | 32 | 112 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
W+++ + +Liea ++ +l+rg+l++++W+ev++++ + g ++ +qCk++++ l+k+yk +k+ ++ ++ +f++l+
XP_013587708.1 32 WSEDATATLIEAWGDRYVHLSRGNLRQNDWKEVADAVnsrHGNGRPKTDVQCKNRIDTLKKKYKTEKAKPSS-------SWCFFERLD 112
*************************************8544445577******************9998876.......488998886 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MDTTPETQSK SQSQSGGGGG SHRLPPGRED WWSEDATATL IEAWGDRYVH LSRGNLRQND 60 WKEVADAVNS RHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PSSSWCFFER LDFLIGPVAL 120 KKSTGGAGAL KSPLTKPISS ESSLDDDDDD DDDDDVEGDW GFVARKHRRV EDEDLCPDPR 180 EGSSCRELAR AILKLGEVYE RIESAKQGMM IELEKQRMEA AKEIELQRMN MLMDMQMELE 240 KSKLGKRRAA ASGKKL
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Functional Description ? help
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Source |
Description |
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK353551 | 3e-89 | AK353551.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-B11. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G11100.1 | 1e-113 | sequence-specific DNA binding transcription factors |