PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013587298.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YA | ||||||||
Protein Properties | Length: 303aa MW: 33503.8 Da PI: 8.1318 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.6 | 4.4e-33 | 168 | 224 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e e kl +ksrkpylheSRh+hA+rRpRg+gGrF XP_013587298.1 168 QEPVYVNAKQYQAILRRRQARAKAELEMKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 224 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.2E-36 | 166 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.414 | 167 | 227 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.2E-29 | 169 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.7E-24 | 170 | 192 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 172 | 192 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.7E-24 | 201 | 224 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MESEDMHSKK PDGGNQIVSE VVHHHTSSSS INSLNPWQRA AAACNASSLV EEAGDKSIAL 60 ENQNNWESTN GSKSPSNRDD NGNKESPQVT TSPQESAGDY SEKSQELVHV GVTGPPHPQL 120 VSHTVGWASS NPYQDPYYAG MMGAYPMAYV PYGGMPHSRM PLPPEVAQEP VYVNAKQYQA 180 ILRRRQARAK AELEMKLIKS RKPYLHESRH QHAMRRPRGT GGRFAKKTNT EASQPKPGEK 240 NNATQSPTSS HSDQPEAWND ECRKQSEEMQ SSASKRREEA DCSGQQWNSI SSNHTSQARL 300 AIK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-19 | 168 | 224 | 2 | 58 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in inflorescence, stems, flowers and siliques. {ECO:0000269|PubMed:11867211}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013587298.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013587298.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit A-9 isoform X1 | ||||
Refseq | XP_013697365.1 | 0.0 | nuclear transcription factor Y subunit A-9-like isoform X1 | ||||
Swissprot | Q945M9 | 1e-148 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | A0A0D3CHV5 | 0.0 | A0A0D3CHV5_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g105110.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13268 | 18 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20910.1 | 1e-145 | nuclear factor Y, subunit A9 |
Publications ? help Back to Top | |||
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