PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586997.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family DBB
Protein Properties Length: 243aa    MW: 27189.4 Da    PI: 5.0316
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586997.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.23e-07443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     C+ +e+ +++  C  ++  lC++C +e+H        H+
  XP_013586997.1  4 QCDVCENAPATVICCADEAALCPKCDVEIHAAnklaskHQ 43
                    7*****************************6566676766 PP
2zf-B_box30.48.2e-105586435
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                    ++C+ ++ek + +fC +++ llC+dC +++H 
  XP_013586997.1 55 PRCDICQEKAAFIFCVEDRALLCRDCDESIHV 86
                    79*****************************4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.172147IPR000315B-box-type zinc finger
CDDcd000211.71E-5345No hitNo description
PfamPF006432.8E-5444IPR000315B-box-type zinc finger
SMARTSM003362.4E-7447IPR000315B-box-type zinc finger
PROSITE profilePS501199.6845299IPR000315B-box-type zinc finger
SMARTSM003361.4E-165299IPR000315B-box-type zinc finger
PfamPF006431.3E-75595IPR000315B-box-type zinc finger
CDDcd000211.90E-85598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIQCDVCEN APATVICCAD EAALCPKCDV EIHAANKLAS KHQRLHLNSL STKFPRCDIC  60
QEKAAFIFCV EDRALLCRDC DESIHVANSR SANHQRFLAT GIKVALSSSS CSKETDKNHQ  120
SEPSNNQQKA KEIPSQQQPS SASPLPWAVD DFFHFSDPEF TDKKGQLDLG ELEWFSDMGF  180
FSDQINQETL PAAQVPELSV AHLGHVHSYR PMKSSVSYKK PRLEIRVDDE DDDEEHFIVP  240
DLG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: High expression in leaves and lower in roots and flowers.
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586997.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3869730.0JN386973.1 Brassica napus salt tolerance protein (STO-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586997.10.0PREDICTED: B-box zinc finger protein 24-like isoform X2
SwissprotQ962881e-147BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A078FDM41e-177A0A078FDM4_BRANA; BnaC05g04110D protein
TrEMBLA8IXV41e-178A8IXV4_BRACM; Salt tolerance protein
STRINGBra015469.1-P1e-178(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-137DBB family protein
Publications ? help Back to Top
  1. Gangappa SN,Holm M,Botto JF
    Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development.
    Plant Signal Behav, 2014.
    [PMID:23733077]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Imtiaz M, et al.
    Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis.
    Plant Mol. Biol., 2015. 89(1-2): p. 1-19
    [PMID:26253592]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]