PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013586641.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 743aa    MW: 82306.9 Da    PI: 6.0357
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013586641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1989145157
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     +++ +++t+ q++e+e++F+++++p+ ++r++L+++lgL+  qVk+WFqN+R+++k+
  XP_013586641.1  89 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKQLSRELGLEPLQVKFWFQNKRTQMKN 145
                     688999************************************************995 PP
2START209.41.3e-652764902206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                     la +a++el+++ +++ep+W++++   +++e+ ++f+++ +     +++ea+r+s+vv+m++++ ve+l+d++ qW+  +a    +a  l+v+s+
  XP_013586641.1 276 LAVAAMEELMRMTQVDEPLWKSLV--VDEEEYARTFPRGIGpkpagFRTEASRESVVVIMNHVNIVEILMDVN-QWSVVFAgmvsRAVSLAVLST 367
                     6789********************..************999********************************.**********9999******* PP

                     T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
           START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                     g      galq+m+ae+q+++plvp R+ +f+Ry++q+ +g+w++vd+S+ds q++p     vR++++ Sg+li++++ng+skvtwvehv++++r
  XP_013586641.1 368 GvagnynGALQVMSAEFQVPTPLVPtRETYFARYCKQQADGSWAVVDISLDSLQPNPP----VRCRRRASGCLIQEMPNGYSKVTWVEHVEVDDR 458
                     *********************************************************8....********************************* PP

                     XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 176 lp.hwllrslvksglaegaktwvatlqrqcek 206
                        h l++++v++g+a+gak+wva l+rqce+
  XP_013586641.1 459 GGvHDLYKHMVSTGHAFGAKRWVAILDRQCER 490
                     988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2167144IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1981152IPR009057Homeodomain-like
PROSITE profilePS5007116.47186146IPR001356Homeobox domain
SMARTSM003891.6E-1887150IPR001356Homeobox domain
CDDcd000861.16E-1889147No hitNo description
PfamPF000463.3E-1789144IPR001356Homeobox domain
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PROSITE profilePS5084841.658266493IPR002913START domain
SuperFamilySSF559616.87E-32267492No hitNo description
CDDcd088751.19E-118270489No hitNo description
SMARTSM002343.5E-59275490IPR002913START domain
PfamPF018522.1E-58276490IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-4370454IPR023393START-like domain
SuperFamilySSF559611.06E-26509735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MSEDNTRKKV KGLAFNFKFK KEMFEPNMFL ADMNNEDSNN HNYNHEDNNN NNERFLRDEE  60
FDSANTKSGS ENQEGGSGND QDNHHPNKKK RYHRHTQLQI QEMEAFFKEC PHPDDKQRKQ  120
LSRELGLEPL QVKFWFQNKR TQMKNHHERH ENSHLRAENE KLRGDNIRYR EALANASCPN  180
CGGPTVIGEM SFDEHQLRLE NARLREEIDR ISAIAAKYVG KPVSSYPLMS PPPLPPRPLE  240
LAMGNFGGDV YGNNPTDLFK SITAPTESDK PLIIDLAVAA MEELMRMTQV DEPLWKSLVV  300
DEEEYARTFP RGIGPKPAGF RTEASRESVV VIMNHVNIVE ILMDVNQWSV VFAGMVSRAV  360
SLAVLSTGVA GNYNGALQVM SAEFQVPTPL VPTRETYFAR YCKQQADGSW AVVDISLDSL  420
QPNPPVRCRR RASGCLIQEM PNGYSKVTWV EHVEVDDRGG VHDLYKHMVS TGHAFGAKRW  480
VAILDRQCER LASVMATNIS PGEVGVITNQ EGRRSMLKLA ERMVISFCAG VSASTAHTWT  540
TLSGTGAEDV RVMTRKSVDD PGRPPGIVLS AATSFWIPVP PKRVFDFLRD ENSRNEWDIL  600
SNGGVVQEMA HIANGRDTGN CVSLLRVNSA NSSQSNMLIL QESCTDPTAS FVIYAPVDIV  660
AMNIVLNGGD PDYVALLPSG FAILPDGNAN GGGEGGSLLT VAFQILVDSV PTAKLSLGSV  720
ATVNNLIACT VERIKAAMSC ETA
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hairless cell files of the hypocotyl epidermis. Expressed in shoot apical meristem (SAM) with higher levels in L1 cells and the epidermal layer of young leaves. Expressed in primary root tips, in the L1 of apical inflorescence meristems, early flower primordia, carpel epidermis, ovule primordia, nucellus, chalaze and seed coat. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013586641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3167760.0AK316776.1 Arabidopsis thaliana AT1G05230 mRNA, complete cds, clone: RAFL09-78-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013586641.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0D3C7R60.0A0A0D3C7R6_BRAOL; Uncharacterized protein
STRINGBo5g005350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2