PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013585869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 641aa MW: 72982.2 Da PI: 8.4869 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 462 | 504 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 +++W++eE + l ++ ++++g +W+ I++++g+gR+ +++ XP_013585869.1 462 KQPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 504 79************************************99876 PP | |||||||
2 | Myb_DNA-binding | 24.2 | 7.9e-08 | 585 | 628 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a+ ++ g+t qck ++ XP_013585869.1 585 WSAVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVIQCKKKFA 628 ********************************.********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 2.7E-21 | 96 | 200 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 2.62E-21 | 98 | 178 | IPR001623 | DnaJ domain |
SMART | SM00271 | 1.0E-19 | 99 | 174 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 2.0E-17 | 100 | 179 | IPR001623 | DnaJ domain |
CDD | cd06257 | 7.14E-13 | 100 | 171 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 18.501 | 100 | 182 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 5.8E-9 | 105 | 123 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 5.8E-9 | 123 | 138 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 5.8E-9 | 154 | 174 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 159 | 178 | IPR018253 | DnaJ domain, conserved site |
PROSITE profile | PS50090 | 6.284 | 457 | 512 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.35E-7 | 458 | 505 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-7 | 461 | 514 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-5 | 461 | 504 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-6 | 462 | 504 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.07E-4 | 464 | 504 | No hit | No description |
PROSITE profile | PS51293 | 8.817 | 580 | 635 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-5 | 580 | 629 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.97E-9 | 581 | 630 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-8 | 581 | 633 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-6 | 585 | 629 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.41E-6 | 585 | 631 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 641 aa Download sequence Send to blast |
MPSLRSDSSI KLITYSEELV DGKPLYASSN SLPVKALNRE PAGHAFHSAA LKLHGCAEEP 60 TDSEGDDKKA GGDDKEKEYV PSFNSYSNKG KKKSGTQQQD HYALLGLSNL RYLATEDQIR 120 KSYREAALKH HPDKLASLLL TEETEEAKEA KKEEIESRFK AIQEAYEVLM DPLKRRIFDS 180 TDEFDDEVPT DCAPQDFFKV FGPAFKRNAR WSVNQRIPDL GDENTKLKEV DRFYNFWYAF 240 KSWREFPDEE EHDLEQADSR EERRWMEKEN ARATAKARKE EHARIRTLVD NAYRKDPRIV 300 KRKEEEKAEK QQKKDAKLMA KKKQEEEAAI AAAEEKRRKE EEEKRAVESA QQQKKAKEKE 360 KKLIRKERNR LRTLSAPVVA QRLLDISEED IENLCMTLNI EQLQSLCDKM GNKEGLELAK 420 VIRDGCSDSS RDQEANSKEK ESEKTNGGGA ERVSVLESTQ KKQPWSKEEI DMLRKGMIKY 480 PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDSSK AFDSFLEKRK PTATIASPLS 540 TREELGESLP ATAKVKPPVK ETVVVGQSSE SNGEASGSSV ETDGWSAVQE RALVQALKTF 600 PKETSQRWER VAAAVPGKTV IQCKKKFAEL KEIIRSKKTA V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5dje_A | 8e-16 | 196 | 299 | 20 | 123 | Zuotin |
5dje_B | 8e-16 | 196 | 299 | 20 | 123 | Zuotin |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 320 | 338 | KKKQEEEAAIAAAEEKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013585869.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189547 | 0.0 | AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585869.1 | 0.0 | PREDICTED: dnaJ homolog subfamily C member 2 | ||||
TrEMBL | A0A0D3CL70 | 0.0 | A0A0D3CL70_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g136560.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2361 | 27 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11450.1 | 0.0 | DnaJ domain ;Myb-like DNA-binding domain |