PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013585848.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

FAR1

Protein Properties

Length: 679aa MW: 77546 Da PI: 7.4332

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013585848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.7	1e-19	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak++GFs+r+++++ + + t+r fvC + g++ ++ ++ k +r+r ++r+gC+a l+++k + + +w+vt + ++HnH+l XP_013585848.1 62 DFYSTFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKTLSEGKPQRNRRSSRCGCQAYLRISKITelgSVEWRVTGFANHHNHDLL 155 6************9998877356667999*********999999*****************9988889***********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-16	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-20	278	367	IPR018289	MULE transposase domain
Pfam	PF04434	1.8E-8	553	587	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.742	556	589	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.2E-7	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSDDAGQMLL IYDDPSDHRS LSLDDASSTE ESPDGTGLSL EAVNDVIPYI GQRFLTHDAA 60 YDFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS 120 RCGCQAYLRI SKITELGSVE WRVTGFANHH NHDLLEPSQV RFLPAYRSIS DADKSRILMF 180 SKTGITVQQM MRLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE 240 QDPNFKFEFT LDANDKLENI AWSYASSIQA YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN 300 NYGVPCFFGC VLLRDENVRS WSWALQAFTG FMSGKAPQTI LTDHNMCLKE AIDGEMPATK 360 HALCIWMVVG KFPSWFNAAL GERYNDWKAE FYRLYHLESI EEFELGWRDM VNSFGLHTNR 420 HINNLYASRS LWSLPYLRSH FLAGMTLSGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD 480 FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMEDG 540 YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQLPDRYLPL 600 RWRRISTSFS KTFRSNADDH GERVQFLQNL VSTLVSESSK SKERLEIATE QTSILLSRIR 660 EQPISSLSLR DISSVQRNF

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSDDAGQMLL IYDDPSDHRS LSLDDASSTE ESPDGTGLSL EAVNDVIPYI GQRFLTHDAA  60
YDFYSTFAKR CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKTLSE GKPQRNRRSS  120
RCGCQAYLRI SKITELGSVE WRVTGFANHH NHDLLEPSQV RFLPAYRSIS DADKSRILMF  180
SKTGITVQQM MRLMELEKCV EPGFLPFTEK DVRNLLQSFK KLDPEDENID FLRMCQSIKE  240
QDPNFKFEFT LDANDKLENI AWSYASSIQA YEIFGDAVVF DTTHRLSAVE MPLGIWVGVN  300
NYGVPCFFGC VLLRDENVRS WSWALQAFTG FMSGKAPQTI LTDHNMCLKE AIDGEMPATK  360
HALCIWMVVG KFPSWFNAAL GERYNDWKAE FYRLYHLESI EEFELGWRDM VNSFGLHTNR  420
HINNLYASRS LWSLPYLRSH FLAGMTLSGR SKAINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQATEQQT MQQNLQNISL KTGAPMESHA ASVLTPFAFS KLQEQLVLAA HYASFQMEDG  540
YLVRHHTKLD GGRKVYWVPQ EGIISCSCQL FEFSGFLCRH ALRVLSTGNC FQLPDRYLPL  600
RWRRISTSFS KTFRSNADDH GERVQFLQNL VSTLVSESSK SKERLEIATE QTSILLSRIR  660
EQPISSLSLR DISSVQRNF

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013585848.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013585848.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Refseq	XP_013585849.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A0D3C900	0.0	A0A0D3C900_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6F1K9	0.0	A0A3P6F1K9_BRAOL; Uncharacterized protein
STRING	Bo5g010680.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]