PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013585235.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 176aa    MW: 20398.9 Da    PI: 10.5558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013585235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH149.5e-051945329
                    HHHHHHHHHHHHHHHHHHHHHHCTSCC CS
             HLH  3 rahnerErrRRdriNsafeeLrellPk 29
                    +  n rE+ RR r+++ f++L +++ +
  XP_013585235.1 19 EQRNLREKERRMRMKHLFFTLSSHVSP 45
                    5679*******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-101684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.7631665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-61882IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MRRQRGRELG EGSSMSWKEQ RNLREKERRM RMKHLFFTLS SHVSPTHRLP VPQLIDHSAS  60
YMMQLKEKVN NLREKKKTLL GEVGNLSEGS SFILPKLSIC SRGSIIKMNL IMDLSMKKVM  120
LHELVSVFEE EGAQVMSANL QNLNDRITYT VTAQAIICRI GIDPSRIEER LREIIF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227LREKER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013585235.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013585235.11e-127PREDICTED: uncharacterized protein LOC106294198
RefseqXP_013651516.11e-127transcription factor bHLH168-like
RefseqXP_022558662.11e-127transcription factor bHLH168-like
SwissprotF4I4E14e-92BH167_ARATH; Transcription factor bHLH167
TrEMBLA0A0D3C9391e-125A0A0D3C939_BRAOL; Uncharacterized protein
STRINGBo5g012060.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-94bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]