PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013585002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 88aa MW: 9832.04 Da PI: 8.3755 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.7 | 2.9e-33 | 22 | 79 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++vrY eC+kNhAa++Gg+avDGC+Efm+ g egt +al+CaACgCHRnFHRreve+e XP_013585002.1 22 SNVRYVECQKNHAANIGGYAVDGCREFMAR-GGEGTDDALTCAACGCHRNFHRREVETE 79 689**************************9.8899********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-33 | 1 | 88 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.6E-30 | 23 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.4E-27 | 25 | 76 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.362 | 26 | 75 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048509 | Biological Process | regulation of meristem development |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MKKRQVVIKQ RKISYTTTTS SSNVRYVECQ KNHAANIGGY AVDGCREFMA RGGEGTDDAL 60 TCAACGCHRN FHRREVETEV VCEYSPPN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in roots, stems and flowers, present in seedlings and leaves, and weakly observed in inflorescence and siliques. {ECO:0000269|PubMed:16412086, ECO:0000269|PubMed:18713354}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013585002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149365.1 | 9e-61 | PREDICTED: mini zinc finger protein 3-like | ||||
Refseq | XP_013585002.1 | 9e-61 | PREDICTED: mini zinc finger protein 3-like | ||||
Refseq | XP_013646701.1 | 9e-61 | mini zinc finger protein 3-like | ||||
Refseq | XP_013715426.1 | 9e-61 | mini zinc finger protein 3-like | ||||
Swissprot | Q2Q493 | 8e-48 | MIF3_ARATH; Mini zinc finger protein 3 | ||||
TrEMBL | A0A078G3G4 | 2e-59 | A0A078G3G4_BRANA; BnaA06g13000D protein | ||||
TrEMBL | A0A0D3CBC6 | 2e-59 | A0A0D3CBC6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397YWZ1 | 2e-59 | A0A397YWZ1_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6EZ61 | 2e-59 | A0A3P6EZ61_BRAOL; Uncharacterized protein | ||||
TrEMBL | M4EA80 | 2e-59 | M4EA80_BRARP; Uncharacterized protein | ||||
STRING | Bra025688.1-P | 3e-60 | (Brassica rapa) | ||||
STRING | Bo5g025880.1 | 3e-60 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM944 | 28 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18835.1 | 3e-50 | mini zinc finger |