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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_013584940.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family |
MYB |
Protein Properties |
Length: 322aa MW: 36645.9 Da PI: 6.7566 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_013584940.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 59.4 | 7.7e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+l++ ++++G g+W++ ++ g++R++k+c++rw +yl
XP_013584940.1 14 KGPWTPEEDEKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 56 | 8.8e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T+eE++ +++++ +lG++ W++I+ +++ gRt++++k++w+++
XP_013584940.1 67 RGNFTAEEEQTIINLHSLLGNK-WSSISGHLP-GRTDNEIKNYWNTH 111
89********************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MGRSPCCDES GLKKGPWTPE EDEKLINHIR KHGHGSWRAL PKQAGLNRCG KSCRLRWTNY 60 LRPDIKRGNF TAEEEQTIIN LHSLLGNKWS SISGHLPGRT DNEIKNYWNT HIRKKLIQMG 120 IDPVTHRPRT DHLNVLAALP QLLAAASFNN LLTLNQNIQP DATSVAKAQW LHSMMQVLNS 180 NNTSSSVDIH HTNYNIFGQS SFLENRPNIS ENLYDPTQSI SRIDHQPLDS FSSPLGVFSH 240 QDNEDMIPPL ISASSDGSKQ TQMMIKNKEI LKHNEHTSNP SSTLTFTQDH QPWCDIIDDE 300 ASDSYWKDLI EQTCSEPWPF HE
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |