PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584816.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 428aa    MW: 49236.5 Da    PI: 8.5735
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584816.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.62.5e-391643312135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssa. 70 
                     + ++drhski T +g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i++++++                         ++ss  
  XP_013584816.1 164 PSRTDRHSKIKTVKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPKIIKIANSlsnkfnhgrfsscdesqprpalglmDTSSDi 258
                     5799************************************************************9999998888888876666666655222223 PP

             TCP  71 ...sec....eaesssssasnsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                        s++    +       +s    +           ++++   k++ sq ++    +l+k+ rakar+ra++rt+ekm++++ 
  XP_013584816.1 259 felSSMwtveD------RGS----NtnmnetrgnkvDRRSVRGKRRMSQPRTPILMKLSKDARAKARERAKDRTKEKMMKRSA 331
                     33222232211......222....1223345566664444444777777777778***********************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.7E-39165328IPR005333Transcription factor, TCP
PROSITE profilePS5136931.237166224IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.607308325IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MCCIPSIKNP QKDMNDNKTF STTTTINEEY MLFPYNDHYS SQPLLPFSPC SSINDILIHS  60
NTSNNHLDHH HHQYLQAPAS PFSHFESVPD FALLASFLPQ KNGHNDNQTI TTNDHHHPPS  120
FLPFNNPFGE SHLIEPSETK TTHIEDSQRI STSQDPNMKK VKKPSRTDRH SKIKTVKGTR  180
DRRMRLSLDV ARELFGLQDM LGFDKASKTV EWLLTQAKPK IIKIANSLSN KFNHGRFSSC  240
DESQPRPALG LMDTSSDIFE LSSMWTVEDR GSNTNMNETR GNKVDRRSVR GKRRMSQPRT  300
PILMKLSKDA RAKARERAKD RTKEKMMKRS AQVNVVVEEE VHNHHDEIVQ KNNKSNVKAT  360
PCEETIQEPL CKNDRFAVCN EIVVDKKYHI SDEFNPSFPM LDHHRSQWAA SSIEVPLFCI  420
YESHFINF
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269|PubMed:17307924}.
UniprotTISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584816.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584816.10.0PREDICTED: transcription factor TCP18
SwissprotA1YKT10.0TCP18_ARATH; Transcription factor TCP18
TrEMBLA0A3N6RIR20.0A0A3N6RIR2_BRACR; Uncharacterized protein
STRINGBo5g117410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72692742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-169TCP family protein
Publications ? help Back to Top
  1. Lewis JM, et al.
    Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development.
    Plant Cell Rep., 2008. 27(7): p. 1217-25
    [PMID:18392625]
  2. Niwa M,Endo M,Araki T
    Florigen is involved in axillary bud development at multiple stages in Arabidopsis.
    Plant Signal Behav, 2013. 8(11): p. e27167
    [PMID:24305631]
  3. González-Grandío E,Cubas P
    Identification of gene functions associated to active and dormant buds in Arabidopsis.
    Plant Signal Behav, 2014. 9(2): p. e27994
    [PMID:24518068]
  4. Stes E, et al.
    Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(16): p. 5123-34
    [PMID:26136271]
  5. Yao C,Finlayson SA
    Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth.
    Plant Physiol., 2015. 169(1): p. 611-26
    [PMID:26149576]
  6. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  7. Seale M,Bennett T,Leyser O
    BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis.
    Development, 2017. 144(9): p. 1661-1673
    [PMID:28289131]
  8. Otori K,Tamoi M,Tanabe N,Shigeoka S
    Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis.
    Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477
    [PMID:28471323]
  9. Lantzouni O,Klermund C,Schwechheimer C
    Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings.
    Plant J., 2017. 92(5): p. 924-938
    [PMID:28977719]
  10. Yang Y, et al.
    The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.
    PLoS Genet., 2018. 14(3): p. e1007296
    [PMID:29570704]