PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013584719.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 599aa    MW: 66848 Da    PI: 9.9853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013584719.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07497546147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_013584719.1 497 RRPFSVAEVEVLVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 546
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.735492551IPR017930Myb domain
SMARTSM007173.7E-6496549IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-9497547IPR009057Homeodomain-like
SuperFamilySSF466893.05E-15498579IPR009057Homeodomain-like
CDDcd116601.26E-15498548No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MVLQRRLDYG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS  60
SNNAIGDGNE EDQCAVKTEP LYGGVQKVVE ERNCDHIHDN NAERRFFVSE ILPKTHGMES  120
FDRSPPPPKD FHFGSTSGVT SDSSEKLGTQ ELGQSVCFRS ETNDKISMHG RLTNNCEPEL  180
TRNVVAEDKH HIGSCFKKPI PPSVCSDDGE NFSARYTTKT FRSTLRIGDR KIKKVLASKY  240
CKVSSKQKDT TVNNSDLDLK PSYYNKKPCL KSLRSERRYP IKKRRYFDGY TASQSEETPK  300
KGFMSTIACQ KQPALQSRDS HVKLGIKSFK VPELFIEIPE TATVGSLKRT VLEAVTTILE  360
GGLRIGVLVH GKKVRDDSKM LLQSGISLDT LSDTLGFCLE PNPPQSTKPL SPEDSDCVRP  420
FNVPHSLTRC LASQGKHAKP SNSVESDLDS KPSAPNRAKP VYSRALIPVA PPLHAQALNV  480
VPPRKPKRSE VAQRRIRRPF SVAEVEVLVQ AVERLGTGRW RDVKLRAFDN AKHRTYVDLK  540
DKWKTLVHTA RISPQQRRGE PVPQELLDRV LMAHAYWSQQ QGKQQLLEGP HKLETSLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A8e-574845864106Telomere binding protein TBP1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed ubiquitously. {ECO:0000269|PubMed:15364931}.
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013584719.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584719.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X2
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A0D3C8A90.0A0A0D3C8A9_BRAOL; Uncharacterized protein
STRINGBo5g008270.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2