PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013584378.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 265aa MW: 28218.3 Da PI: 5.6697

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013584378.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.4e-05	151	191	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + R +r+ ++++ L++l+ + +K + a++L +A+ YIk Lq XP_013584378.1 151 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 191 678889999*******999.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.668	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-11	143	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-7	149	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.33E-4	149	195	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MGDTADDQAM VEAPGVPSFS ELLMLSDGFL SSSEDHRREI NGGDGGEDSF GFVFSGTNGS 60 KMLCFSGDCQ NGDESLFQEP SFPSGVSVSD PSSCTINTCK NSNDTCADER SIKSSNKKRT 120 GSGNGQNMDH NQKPSKKCKK NQDKSTVGIA KVRKERLGER IAALQQLVSP YGKTDAASVL 180 HEAMGYIKFL QDQIQVLCSP YLINYSLDGG AVTGDVTPGK KVRDLRSRGL CLAPVSSTVH 240 VENSNGADLW SPATASMGHT MSPSQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013584378.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013584378.1	0.0	PREDICTED: transcription factor bHLH113 isoform X1
Swissprot	Q9LT67	1e-140	BH113_ARATH; Transcription factor bHLH113
TrEMBL	A0A0D3CIF8	0.0	A0A0D3CIF8_BRAOL; Uncharacterized protein
STRING	Bo5g114070.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7402	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	1e-142	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]