PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013583764.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB_related | ||||||||
Protein Properties | Length: 390aa MW: 44381.9 Da PI: 5.9993 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.3 | 1.3e-11 | 341 | 388 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 + WT+eE+ l ++vk++G+ Wk I + + Rt+ ++k++w+++ XP_013583764.1 341 KFWTPEEEAVLREGVKEYGKS-WKEIKNANPevfAERTEVDLKDKWRNL 388 67*****************88.************99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.624 | 335 | 390 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-13 | 336 | 390 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.03E-13 | 337 | 389 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.6E-5 | 339 | 390 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 4.51E-15 | 341 | 390 | No hit | No description |
Pfam | PF00249 | 6.1E-9 | 343 | 388 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEVMDKWVAE FFIRRQKNPR VSPTNLLSAL KFSESAGDCS NNLKKASVLR DISDSLIRGN 60 VSEGMLDLLE TLEKLHQGSS VLTESHRSAY CWTAAECTVR LMWPSSASEG LYGDAVERIW 120 TKRIGVLKER GSGLVSEELL KWEADLRKAV EDDEVYKRIR ESNVRYSAVC FLNQLLKEQW 180 AVLGSCSLES VAQRMLLKRR KADKGSREGP NGVGESTRRL DEGEKENDAA EQEEEEERTM 240 GSAQEQGLVD EGDEMAAREL KDYLLEIQRQ IDSSFTRQLQ EPNNANITPQ PSRVNSTRTS 300 GQQQDSASES RVRPHLPTPE PLNVSPLKKK RANPAARRIK KFWTPEEEAV LREGVKEYGK 360 SWKEIKNANP EVFAERTEVD LKDKWRNLVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013583764.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | S84968 | 8e-72 | S84968.1 Bcg4-4=acyl carrier protein [Brassica rapa, Genomic, 3898 nt]. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013583764.1 | 0.0 | PREDICTED: uncharacterized protein LOC106292672 isoform X1 | ||||
TrEMBL | A0A0D3CMP6 | 0.0 | A0A0D3CMP6_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g146770.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7720 | 17 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58340.2 | 1e-145 | MYB_related family protein |