PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013583725.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 694aa    MW: 78655.2 Da    PI: 5.4008
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013583725.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.41.2e-1033146912373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     ++lL+ cA+ +s+gd+  a+ lL +++++++p gd+ qRla +f++AL+arl + s+s++ +   + ++++++ +++l+++++f  +sP++++ +
  XP_013583725.1 314 RTLLTLCAQSISAGDKITADDLLRQIRKQCTPLGDASQRLAYFFAKALQARLEGsSGSTIQSYYDSIASKKRTAAQTLKSYHVFLSASPFMTLMY 408
                     6799**************************************************6777777777999999999********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++Il+a++ ++ +H+iDf+i +G+QWp ++q +++ + gp +lRiTgv+ p++g   +e++  tg+rL+++++++gvpfe+n+++++++e+
  XP_013583725.1 409 FYSNKMILDAAKDASVLHVIDFGILYGFQWPMFIQNISKSKTGPRKLRITGVEIPQNGfrPTERIDDTGRRLTEYCKRFGVPFEYNAIASRNWET 503
                     *********************************************************9*****************************9999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++lee++++p+E+laVn +l+l++l d +   e+  +rd++Lkl+++++P+v+  +  + + n++ F +rf eal +ys+l+d++ ++l++e+ e
  XP_013583725.1 504 IRLEEFKIRPNEVLAVNTALRLKNLRDVTPGGEEdcPRDAFLKLIRDMKPDVFLSSTVNGSFNAPFFTTRFKEALFHYSSLLDMFGSTLSKENPE 598
                     **************************99988777789********************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     ri  E e+ gre++nv+aceg +r+er et+++W+ r+++aGFk+ p++ + +++ +  ++k +  + + ++e+s+++++gWk+r L+s S+W
  XP_013583725.1 599 RIHFEGEFYGREVMNVIACEGVDRVERPETYKQWQVRMMRAGFKQKPVEGELVESFRVKMKKWGyHKNFVLDEDSNWFLQGWKGRILFSSSCW 691
                     **************************************************************999999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.706287671IPR005202Transcription factor GRAS
PfamPF035144.3E-101314691IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MESNFSGTVN GFKYYDVGFL PNQNPNLGFG VPSSSDFDLR LDHWVPATQQ DQGFDLHHQQ  60
QYSPPADEID SENTLLKYVN QLLMEGTLAE EQTTFYDSLA LRQTEQMLQQ VISDSQAQST  120
YTIPANSITS SSTTGGGSSY WSSTSNSSVG GQVLYDDDAV GDSGVISFQG PNTLRGFTQP  180
TSEILVGSMF TDTDSVNQFK RGLEEASKFL PNTDQWIFNP DHEVKEERGL SARKNRHRRE  240
EEEEDLEEAR SSKQSALTVV EDIKLTELFD KVLLLDGESD PQVIEEGDSV SSKPQVAKKE  300
GGRTKKKSQT FDFRTLLTLC AQSISAGDKI TADDLLRQIR KQCTPLGDAS QRLAYFFAKA  360
LQARLEGSSG STIQSYYDSI ASKKRTAAQT LKSYHVFLSA SPFMTLMYFY SNKMILDAAK  420
DASVLHVIDF GILYGFQWPM FIQNISKSKT GPRKLRITGV EIPQNGFRPT ERIDDTGRRL  480
TEYCKRFGVP FEYNAIASRN WETIRLEEFK IRPNEVLAVN TALRLKNLRD VTPGGEEDCP  540
RDAFLKLIRD MKPDVFLSST VNGSFNAPFF TTRFKEALFH YSSLLDMFGS TLSKENPERI  600
HFEGEFYGRE VMNVIACEGV DRVERPETYK QWQVRMMRAG FKQKPVEGEL VESFRVKMKK  660
WGYHKNFVLD EDSNWFLQGW KGRILFSSSC WVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-433136915374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232239RKNRHRRE
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cotyledons, leaves and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013583725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013583725.10.0PREDICTED: scarecrow-like protein 31
SwissprotQ3EDH00.0SCL31_ARATH; Scarecrow-like protein 31
TrEMBLA0A0D3C8A80.0A0A0D3C8A8_BRAOL; Uncharacterized protein
STRINGBo5g008260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135111728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07520.10.0GRAS family protein