PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 359aa MW: 41031.8 Da PI: 8.9536

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013583243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70	2.2e-22	23	69	5	51
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +s + ++++kR+ +++KKA ELS+LC++ev+vi+++s+g+l+++++ XP_013583243.1 23 TSSLKATSLAKRQVTVFKKARELSILCGIEVCVIYYGSDGELKTWPK 69 578899***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-5	14	70	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.89E-17	24	102	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.88E-17	27	91	No hit	No description
PROSITE profile	PS50066	11.886	27	71	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.9E-13	28	67	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MASSSSFLPS SSSLVRQNHF QKTSSLKATS LAKRQVTVFK KARELSILCG IEVCVIYYGS 60 DGELKTWPKD REKVKDMARR YSQLSDMKRR KGQDDLDKFL KKINKEDSKK KKVKVESSCK 120 YLDWDPRFDN CSVEQLTELI QSLEHSETKL QHRLRGAVES QRQRNMYYTT MAGQEQMNHL 180 QQHSDQVSMD QYNHGTGTLP QLAVSTSAFN QSQSLAPLPN SLTIHHNPNM ESYSRLLGVQ 240 ETGMNELLSM NMLPYNNINT NNVNVFPNQF HQNSYNMEDY SGFLGGINNV SSEDYSGLLW 300 TQGTGISGLQ NMDMFGYNNN NNNNNNAYGF SNQLVQYQGQ RTPPGFQYMD RSTQNIRPL

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MASSSSFLPS SSSLVRQNHF QKTSSLKATS LAKRQVTVFK KARELSILCG IEVCVIYYGS  60
DGELKTWPKD REKVKDMARR YSQLSDMKRR KGQDDLDKFL KKINKEDSKK KKVKVESSCK  120
YLDWDPRFDN CSVEQLTELI QSLEHSETKL QHRLRGAVES QRQRNMYYTT MAGQEQMNHL  180
QQHSDQVSMD QYNHGTGTLP QLAVSTSAFN QSQSLAPLPN SLTIHHNPNM ESYSRLLGVQ  240
ETGMNELLSM NMLPYNNINT NNVNVFPNQF HQNSYNMEDY SGFLGGINNV SSEDYSGLLW  300
TQGTGISGLQ NMDMFGYNNN NNNNNNAYGF SNQLVQYQGQ RTPPGFQYMD RSTQNIRPL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013583243.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013583243.1	0.0	PREDICTED: agamous-like MADS-box protein AGL93
Swissprot	Q9LSB2	1e-101	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	A0A0D3CIT2	0.0	A0A0D3CIT2_BRAOL; Uncharacterized protein
STRING	Bo5g117290.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	2e-89	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]