PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575559.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 402aa    MW: 46372.3 Da    PI: 6.5804
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575559.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.28.5e-1641126190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+eYA + GF  ++++s+k  ++ge     + Cs++g++ ++ +    + +  +++  +C ak+++k++kdg w++tk+e +H+He +
  XP_012575559.1  41 SFYEEYALRKGFGWKIRSSRKG-QDGELCYLILSCSRKGSKVSKISC---TLKILPTKVNNCPAKIVIKLNKDGLWYITKFEPDHTHETS 126
                     5****************99998.8899**************998877...7778888899***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1341126IPR004330FAR1 DNA binding domain
PfamPF105512.2E-7218245IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDCGTIEDEG IKVDNLDDDD NACCWEPTTG MCFSCLEEVK SFYEEYALRK GFGWKIRSSR  60
KGQDGELCYL ILSCSRKGSK VSKISCTLKI LPTKVNNCPA KIVIKLNKDG LWYITKFEPD  120
HTHETSPTKA RLFKANKKMN LHVKRTIQIN DDAGVRINKT FQSLVKDAGG HENVPFVKEM  180
EQNSDFFYDI DFDDDFHVRN VFWANARSRA AYEYFGDVVT FDTTYLTNKY DMPFVAFVGV  240
NHHGKAPLGI VTDQCKAMKN AIEFKFALKE AVYDTVTKEA FEEKWRSFIE KFELQQNDWL  300
NGLYNEHHRW APTLQMKYFW AGMSTTQRSE SIHSFFDGYI NSPTSLNQFV KQYDNALKSR  360
VEKEFEADFN SIGTTISCGS NSSIEKQFQG EYTHAKFKEV QT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1345211e-124AC134521.41 Medicago truncatula chromosome 6 clone mth2-31k24, complete sequence.
GenBankAC1614051e-124AC161405.2 Medicago truncatula chromosome 2 BAC clone mth2-33p21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575559.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S3EJI50.0A0A1S3EJI5_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004488492.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.18e-55FAR1 family protein