PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012575055.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family STAT
Protein Properties Length: 717aa    MW: 80927.3 Da    PI: 6.6734
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012575055.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT191.68.3e-602223431122
            STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkky 95 
                     ldvvl++a+gqpv+k+ ev asL+yad+g++ve+++d+eapLL sydG+efss +rp+kll Grasfkl+isqLsskcdnrLf i+f++pkl +y
  XP_012575055.1 222 LDVVLSDAFGQPVDKENEVFASLVYADTGAPVENTSDDEAPLLSSYDGIEFSSRERPSKLLLGRASFKLRISQLSSKCDNRLFLIRFCVPKLGNY 316
                     8********************************************************************************************** PP

            STAT  96 pfleavskpirCisrsrntrsssltkk 122
                     pfl++ + pirCisrsrntr s+l++k
  XP_012575055.1 317 PFLQTNTCPIRCISRSRNTRLSTLVWK 343
                     ********************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF133852.5E-69172No hitNo description
SuperFamilySSF498996.49E-825172IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:2.60.120.2009.0E-625172IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.104.8E-6606651IPR000980SH2 domain
SuperFamilySSF555507.09E-8608691IPR000980SH2 domain
PROSITE profilePS500019.589614671IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MGSDAMGREG YRTLKDLRLE IEGKEGTFSI CFWVYLMNST TFPAIILHQV HSDISQSAPF  60
LIINENKRVN ILPVLFLHEE APDTGSINSW TEVPHATVDF EFSLEKWVHV GCEVCPNNIR  120
LQINGEIVAK KSLSSLLNKE SNSSDLKKIT LANVGGNGNN VQGYVHNFEV FHNVSFIKDH  180
HLKDPPLKLS IDESAASEVE EESGGIWGIV GGKASCRRNF SLDVVLSDAF GQPVDKENEV  240
FASLVYADTG APVENTSDDE APLLSSYDGI EFSSRERPSK LLLGRASFKL RISQLSSKCD  300
NRLFLIRFCV PKLGNYPFLQ TNTCPIRCIS RSRNTRLSTL VWKRSTYALQ RLNLSQSSAM  360
DDRSLEHTHS GHEEKTNPLM KRFRVGLDKI SVSVNADSTK KQSGVECNSH VWIPNQVENG  420
FPRSLDGRSL NFEEDAYPSE SESIGERNSP SNSMGSRRYP ISDITIFKYC LAGLTERSLM  480
LKEIATSSSD REISELAHQV SHYSGCSHHG NQILSAKRLI EDGTNLWRAM SANNHHVPWE  540
SAVYEIEEQF MKIASCGSRS FSHQDLEILR RIAGCQEYLT QENFEKLWCW LYPVACIISR  600
DWVNPIWNST SPKWIEGFIT KEEAEASLQG PAGFQEPGTF ILRFPTSRSW PHPDAGSLIV  660
TYIGKDYKLR HRLLSMDHIY GSDRRIDVKP LQDMLLAEPE LSRLGRTMRS YKAHLQH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012575055.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012575055.10.0SH2 domain-containing protein A-like isoform X2
SwissprotQ56XZ10.0SHB_ARATH; SH2 domain-containing protein B
TrEMBLA0A1S3EGT50.0A0A1S3EGT5_CICAR; SH2 domain-containing protein A-like isoform X2
STRINGXP_004513787.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]