PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574320.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 512aa    MW: 56658.2 Da    PI: 9.7565
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-2969128159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg +WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+H+h+
  XP_012574320.1  69 MNDGGQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDMSILITTYEGTHDHS 128
                     589*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2954128IPR003657WRKY domain
SuperFamilySSF1182908.37E-2662129IPR003657WRKY domain
PROSITE profilePS5081126.964130IPR003657WRKY domain
SMARTSM007746.2E-3369129IPR003657WRKY domain
PfamPF031063.7E-2570127IPR003657WRKY domain
PfamPF142234.8E-9399442No hitNo description
SuperFamilySSF577564.88E-7458486IPR001878Zinc finger, CCHC-type
Gene3DG3DSA:4.10.60.103.8E-5463485IPR001878Zinc finger, CCHC-type
SMARTSM003430.0012470486IPR001878Zinc finger, CCHC-type
PROSITE profilePS5015810.46471485IPR001878Zinc finger, CCHC-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MVAIIRLNIT FDPSSTTKEG KEEELTKKWS PNKVLKTTRT GDITTEVSQY SQLKKTRVCI  60
RARCDTQTMN DGGQWRKYGQ KIAKGNPCPR AYYRCTVSPS CPVRKQVQRC AEDMSILITT  120
YEGTHDHSLH TSATAMAYTT SAAASMLKCS SFTSQQGLTN SNTFPIINSN FSYNLNPPNC  180
TSTSKKFPIP QQLYFQNSSI SSLNSHPTVT LDLTTPQTPF PIGKFNTPFP STQKSSSTNP  240
NLSSTITPFQ SCMLPSTLSP YSGHFNYGGL INQYGNQAFQ GHVYQPSYMM SNHAISQQPL  300
RDSIVATTKA ITTNYPKFQY ALKAALTTYV GSNEFSCDGV KENHVVAENE ALNLKLGGDR  360
SYSKNTTCSG RGFSSGLEFP LLSDLPHQKR IILGIFRGKN LSSAKQLWEK LEGLYQAKGI  420
SNRLLLKEQF HNLRMDEERR MKNDKSTSSS SMLLTRSGAN GKKIHAKNLV CWECGKFGHV  480
KRNCPGGAVS EKDSETSAGK VSLVLEMMGD LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2156129173WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574320.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104597e-76AP010459.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB15M22, BM1745b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192471.10.0probable WRKY transcription factor 72
TrEMBLA0A3Q7Y3850.0A0A3Q7Y385_CICAR; probable WRKY transcription factor 72
STRINGXP_004511243.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-48WRKY DNA-binding protein 72