PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574233.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 370aa    MW: 41867 Da    PI: 9.829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574233.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05120142123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++Cgk+Fs+   L  H r+H
  XP_012574233.1 120 HKCNICGKTFSNGKALGGHRRSH 142
                     79*******************99 PP
2zf-C2H214.50.00011175196223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  C+k F++k  L  H+r+H
  XP_012574233.1 175 TCYLCKKKFPSKNALYGHMRSH 196
                     699******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.9E-9119142IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-8120142No hitNo description
SMARTSM003550.0065120142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-5120142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.032120142IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SuperFamilySSF576673.71E-8169196No hitNo description
PROSITE profilePS501579.037174196IPR007087Zinc finger, C2H2
SMARTSM003550.11174196IPR015880Zinc finger, C2H2-like
PfamPF139124.0E-4176196IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MPFVTVELVA CICHMHYEGI VSYSFSSTTS TPFLTVTCVN NDKHRKEEYG ERKKRKNLLA  60
LHKPSEQKLS MAKDRKHDYN YEETYEKYEK KMKRSFSVSS DHEDDAKRMN GKVSIQELTH  120
KCNICGKTFS NGKALGGHRR SHFQAAKKKP NSQKVKPFFS IEDIRAKKYV KKEPTCYLCK  180
KKFPSKNALY GHMRSHPFRV CKGVSPPSNH NSSSNSNSNS NSSSQQNKED QDDDGDCSLP  240
KWQKRDKRGR KCIGSAEAAN NLVHLRSNVV NMSINVPKSV DEFPIPSKKG ESSTIVVNKI  300
KFFFGSSLKI GNQSDIGNGG ESHNIDKELK KGNGNGLVSE SRVDENTNDG HSAEQKKLEF  360
DLNEPYVRED
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027192704.10.0uncharacterized protein LOC101497250
TrEMBLA0A3Q7XGP10.0A0A3Q7XGP1_CICAR; uncharacterized protein LOC101497250
STRINGXP_004510982.11e-173(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15181913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-12C2H2 family protein