PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012574126.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 404aa MW: 46045 Da PI: 4.5292

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012574126.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.2	8.6e-46	12	141	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +p+GfrF+Ptdeelv++yLk+k+ g++ l++vi+evd++k+ePwdLp+ ++k+++ ew+f + rd kya++kr nr tk g+Wkatg+d++++ XP_012574126.1 12 VPVGFRFRPTDEELVNHYLKNKLLGNDSILHNVIAEVDVCKFEPWDLPAcsAIKSDDPEWFFLCARDYKYAKSKRLNRRTKCGFWKATGNDRNIK 106 599**********************999899***********5347888888********************************* PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++++g+kktLvfykg p +kt+Wv+hey++ XP_012574126.1 107 VRgTNKVIGTKKTLVFYKGCVPG-VKTNWVIHEYHA 141 9967778******988775.9*******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-49	11	159	IPR003441	NAC domain
PROSITE profile	PS51005	50.618	12	159	IPR003441	NAC domain
Pfam	PF02365	7.1E-26	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
METTSFPILD FVPVGFRFRP TDEELVNHYL KNKLLGNDSI LHNVIAEVDV CKFEPWDLPA 60 CSAIKSDDPE WFFLCARDYK YAKSKRLNRR TKCGFWKATG NDRNIKVRGT NKVIGTKKTL 120 VFYKGCVPGV KTNWVIHEYH AVTFEDSQRN FVLCRLMKKA EKNGEDETDT MICDEGEPSR 180 PLSSDYENQE TVEGISDVDG TLQEMNMESL FQAPHQADRY FPFSTQQSSI FENEQEVSFQ 240 NYRFPDAYFG NENIVVQSPF ETIEEENKFI KSMFIDGEFV TSERRRHAFV NGPTESESLR 300 RVYYQSIDSN VEVVSTPFGD IPDTSTAYLE YRGSIEYNAS NVFQSMHGVL HGSTCLVSSN 360 NSNSQSTFQD DFLGVEASSC DSTADKPSEF NCNENEISSS PSTL

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

METTSFPILD FVPVGFRFRP TDEELVNHYL KNKLLGNDSI LHNVIAEVDV CKFEPWDLPA  60
CSAIKSDDPE WFFLCARDYK YAKSKRLNRR TKCGFWKATG NDRNIKVRGT NKVIGTKKTL  120
VFYKGCVPGV KTNWVIHEYH AVTFEDSQRN FVLCRLMKKA EKNGEDETDT MICDEGEPSR  180
PLSSDYENQE TVEGISDVDG TLQEMNMESL FQAPHQADRY FPFSTQQSSI FENEQEVSFQ  240
NYRFPDAYFG NENIVVQSPF ETIEEENKFI KSMFIDGEFV TSERRRHAFV NGPTESESLR  300
RVYYQSIDSN VEVVSTPFGD IPDTSTAYLE YRGSIEYNAS NVFQSMHGVL HGSTCLVSSN  360
NSNSQSTFQD DFLGVEASSC DSTADKPSEF NCNENEISSS PSTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-35	12	159	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-35	12	159	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-35	12	159	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-35	12	159	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-35	12	159	20	168	NAC domain-containing protein 19
3swm_B	5e-35	12	159	20	168	NAC domain-containing protein 19
3swm_C	5e-35	12	159	20	168	NAC domain-containing protein 19
3swm_D	5e-35	12	159	20	168	NAC domain-containing protein 19
3swp_A	5e-35	12	159	20	168	NAC domain-containing protein 19
3swp_B	5e-35	12	159	20	168	NAC domain-containing protein 19
3swp_C	5e-35	12	159	20	168	NAC domain-containing protein 19
3swp_D	5e-35	12	159	20	168	NAC domain-containing protein 19
4dul_A	5e-35	12	159	17	165	NAC domain-containing protein 19
4dul_B	5e-35	12	159	17	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012574126.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012574126.2	0.0	LOW QUALITY PROTEIN: NAC domain-containing protein 69-like
TrEMBL	A0A1S3EGP7	0.0	A0A1S3EGP7_CICAR; LOW QUALITY PROTEIN: NAC domain-containing protein 69-like
STRING	AES84464	1e-176	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2065	25	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35580.3	1e-54	NAC transcription factor-like 9