PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012574070.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 654aa    MW: 76260.8 Da    PI: 9.0828
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012574070.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1798.9e-2513103191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                     +fYneY+k++GF +r+++ +ksk++g  t+r+f+C +eg r  +k+  +   ++raetr+gCka++++++++  gk++v +++ +HnH+l+p
  XP_012574070.1  13 EFYNEYSKRIGFGIRREYANKSKKDGILTSRRFTCFQEGIRGVDKRG-HPVGEHRAETRIGCKACMVISLDQkIGKYKVVDFVAQHNHPLQP 103
                     6******************************************9999.99999******************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.7E-2013103IPR004330FAR1 DNA binding domain
PfamPF105517.0E-14174223IPR018289MULE transposase domain
PROSITE profilePS509669.446395442IPR007527Zinc finger, SWIM-type
SMARTSM005754.5E-4417444IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MEMKFESEAT TYEFYNEYSK RIGFGIRREY ANKSKKDGIL TSRRFTCFQE GIRGVDKRGH  60
PVGEHRAETR IGCKACMVIS LDQKIGKYKV VDFVAQHNHP LQPPEYVHMI RSHRHISEVQ  120
ASQIILADES GLRPKDFHEY MSKQVGGIET VGFTRQDLKN YLRTKRKQSL KYGDWLFETF  180
LKAMGGEKPK TILTDQDAAM AKAISLVVPE TFHGLCTWHI RQNALKHVNH LYQKSSQFCL  240
EFEACIDLHE EEAEFLNAWN SLLVEHNVSK DSWLHMIFQL KAKWSWAYVR KTFIAGMRST  300
QLSESFNADL KNHLKSDLNL VQFFTHFKRV VNGKRNNESE ADFESRHKLP RLKMKKARML  360
VQAGNVYTPK IFEEFQEEYE EYQDTCIKNL KEGLYVVTNY DNTKERMVMG NPMDQKVACD  420
CRKFETHGIL CNHALKVLDA MNIKLIPQHY ILKRWTRDAR LGSNQDWKVK HVELDIKAHF  480
MKRYNELCPR MIKLTNRASE SHESYVFLSK VYEESNKIID DMLAKIYVNE ESSRMIHVSI  540
SIANDEIDNN LETLGCAKGI KKRDCSHQNK KRPKSWQPLD RNQFLSEVDT RIQHQATTQM  600
TQSTQVDNGI QHQATTQMTQ SRQSSQVDNG IQYQATTQMT QSRQSSQVDN GIQH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012574070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505846.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S2YK570.0A0A1S2YK57_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_004503202.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.12e-49FAR1 family protein