PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012574047.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GRF | ||||||||
Protein Properties | Length: 355aa MW: 40679.4 Da PI: 8.1461 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 79.8 | 2.5e-25 | 76 | 120 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_012574047.1 76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEP 120 79****************************************985 PP | |||||||
2 | QLQ | 55 | 2.4e-19 | 10 | 46 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+FT++Q+q+L++Q+l++Ky++ + P+P++L++ i++ XP_012574047.1 10 SPFTPNQWQELEQQALVFKYMVTGTPIPSDLIFSIKR 46 89*******************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.2E-12 | 10 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.974 | 11 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-13 | 11 | 44 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.617 | 76 | 120 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.3E-21 | 77 | 119 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0030912 | Biological Process | response to deep water | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MMSASSRNRS PFTPNQWQEL EQQALVFKYM VTGTPIPSDL IFSIKRSLDT SISSRIFPHH 60 PIGWGCFEMG FGRKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEP 120 VSSSSTTTTT TITSQTQNQN QTNTLLPSYN NRNLSLNNNN TSALTSPSCS FPFSPLSSSS 180 NIGIDSQPFS QSYQNPYFYS QSTSSRPLDS DFQTQQDSTT HHLFLDSGSY SHDEKDYRHV 240 QGIREGVDER VFFPETSGSS RSYHDSYQQL SVNSFKSYST SQFQNINDNN QRQQEQQQQH 300 CFVLGTDFKS TRPSNKDKES ETTQKPLHHF FGEWTPKNTD SWLDLASNSR IPSDE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012574047.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144645 | 2e-84 | AC144645.17 Medicago truncatula chromosome 8 clone mth2-11e15, complete sequence. | |||
GenBank | AC183304 | 2e-84 | AC183304.14 Medicago truncatula chromosome 8 clone mth2-68f12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027192248.1 | 0.0 | growth-regulating factor 5-like isoform X2 | ||||
TrEMBL | A0A3Q7XV95 | 0.0 | A0A3Q7XV95_CICAR; growth-regulating factor 5-like isoform X2 | ||||
STRING | XP_004510465.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 7e-63 | growth-regulating factor 5 |