PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573809.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 806aa    MW: 89007.4 Da    PI: 6.9653
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.3e-085597347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
   XP_012573809.1 55 AWTRQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 97
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.02E-1048102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-550100IPR009057Homeodomain-like
PROSITE profilePS5129313.41651102IPR017884SANT domain
SMARTSM007172.7E-652100IPR001005SANT/Myb domain
CDDcd001677.41E-65598No hitNo description
PfamPF002495.7E-65597IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MQDEAQILID LNTQLHSETV VSVQNEDPGV SSSLVNAVIM SQQPVLKKPT RQWAAWTRQE  60
EESFFTALRQ VGKNFEKITS RVQSKNKDQV RHYYYRLVRR MNKLLGPGLC LDAKNSKDTN  120
AAMLRWWSLL EKYSCKASKL HLKPRRFKIF LEALEHQLLK DRKKNVRKRP LQGGNCQPSA  180
LNAVSNQARG SGNDTRAVKM ILVDSQNIIK LGPSKPPLKR NVNMGVNRSN AKGDSNNSKP  240
TRQRKKSVCN VFLLGIATSA AYRKWEKAAI AGVSLVADAA EHLERAATVK DVEHGQENPG  300
EKCSEPVDQV LSSLPTFPPN HFVDNNVQNI MKLKLQLFPI DEPTRRALEM DKHNPYLELT  360
LSTRKKISSI LEHLNRKWGN SSIAIGELVL FPYGVQKENL NNYQRWNQES TLSAADIYAV  420
IGSPPIFRLR YGWFSNTKHG ALNMQAPVAS SCLARQSKNG GDNMKDQIVN LASLPIPSTN  480
NYSTECAVDC GTSLIKTGAL TTTSTYLSNA RDDSTYQNTS TEEPCGPTAF ISLHGKDVTD  540
GAVTRKLEDM DDLKSNSGSG VSAGEWADSL TNISVGDLLL GVSQNLDDNC INPLIGENCH  600
SVHQIPFSSD SFDAAIAAHI SKHQDKIGQS TMASHMSSIW DAEETRDAFS FKKDPILHEN  660
GPCLSFIVSL DSDKKVPGRS FENLDKLSPE KESLVDDIAQ TDPMAMDSCE SDADIQYQLA  720
KDLTGLADMY WPDSLGPLDL NIPSTKYDGG DLILSDSLSG LNRLIASSLD AFQNCSFFGI  780
DKKETPSTVE AQETATFSDF KIGSGI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573809.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358919e-95AC235891.2 Glycine max clone GM_WBc0069F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573809.10.0TSL-kinase interacting protein 1 isoform X1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A1S3EEK30.0A0A1S3EEK3_CICAR; TSL-kinase interacting protein 1 isoform X1
STRINGXP_004509588.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1