PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012573595.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 284aa    MW: 31274.2 Da    PI: 6.9636
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012573595.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.66.8e-0978122347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++         G+g+W+ I+r   k+Rt+ q+ s+ qky
   XP_012573595.1  78 PWTEEEHKXXXXXXXXXGKGDWRGISRNYVKTRTPTQVASHAQKY 122
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.51871127IPR017930Myb domain
SuperFamilySSF466896.77E-1373128IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-1174125IPR006447Myb domain, plants
CDDcd001671.19E-478123No hitNo description
PfamPF002495.8E-678122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-678122IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSSASTATVS GEFMLFGVRV VVDSXXXXXQ YEQSQDNNII IKDDTNKDVL PAGYASADDA  60
VPQNSGKNRD RERKRGIPWT EEEHKXXXXX XXXXGKGDWR GISRNYVKTR TPTQVASHAQ  120
KYFLRRSNVN RRRRRSSLFD ITTDTVSAIP MEEDKVNNQD SVSQLQPLSP AAPETAKING  180
FPMMSVFQLG VNESPMEELT LGQGNVKNNV STNLFHPIPF VVSDPKASTV SDITSSSSDS  240
STDPPTLSLG LSFSSDQRKT SSAHSALYAM PCFNKNGDNI ISVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012573595.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012573595.10.0LOW QUALITY PROTEIN: transcription factor MYB1R1
SwissprotQ2V9B05e-49MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A1S3ECN30.0A0A1S3ECN3_CICAR; LOW QUALITY PROTEIN: transcription factor MYB1R1
STRINGXP_007155372.11e-111(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.24e-44MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]