PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012573278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | FAR1 | ||||||||
Protein Properties | Length: 183aa MW: 21350.7 Da PI: 9.9947 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84 | 2.5e-26 | 12 | 100 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++r++tr gCka++++k +k+gkw++tk++++HnH+l+ XP_012573278.1 12 FYDEYARHVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRSSTRDGCKAMIHIKYDKSGKWVITKFVKDHNHPLV 100 9**************************************99999998****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.9E-24 | 12 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEFVSEDAAK IFYDEYARHV GFVMRVMSCR RSERDGRILA RRLGCNKEGH CVSIRGKFGP 60 VRKPRSSTRD GCKAMIHIKY DKSGKWVITK FVKDHNHPLV VSPREARQTV DEKDKKIQEL 120 TTELRIKKRL CATYQEQLTS FMKTVEDHSD KLSARIRHIL GNLKEFESIE ELLLQRACAR 180 CDH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012573278.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144425 | 0.0 | BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507548.1 | 1e-133 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_004507549.1 | 1e-133 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_004507550.1 | 1e-133 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_012573278.1 | 1e-134 | protein FAR1-RELATED SEQUENCE 5-like isoform X4 | ||||
Swissprot | Q9SZL8 | 1e-20 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A1S2YNM1 | 1e-132 | A0A1S2YNM1_CICAR; protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A1S3ECY9 | 1e-133 | A0A1S3ECY9_CICAR; protein FAR1-RELATED SEQUENCE 5-like isoform X4 | ||||
STRING | XP_004507548.1 | 1e-133 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-100 | FAR1 family protein |
Publications ? help Back to Top | |||
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