PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572994.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 502aa    MW: 55196.8 Da    PI: 6.9272
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572994.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31162219260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  XP_012572994.1 162 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 219
                     8****************************************.***************85 PP
2WRKY106.51.4e-33321379159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_012572994.1 321 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 379
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.227156220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-26158220IPR003657WRKY domain
SuperFamilySSF1182901.7E-24160220IPR003657WRKY domain
SMARTSM007744.5E-33161219IPR003657WRKY domain
PfamPF031064.5E-24162218IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37306381IPR003657WRKY domain
SuperFamilySSF1182901.83E-29313381IPR003657WRKY domain
PROSITE profilePS5081138.825316381IPR003657WRKY domain
SMARTSM007743.1E-39321380IPR003657WRKY domain
PfamPF031062.9E-26322379IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MFTVSVVEPS PTTGSLPRLQ QTAHGFVTSS TSATFPVTAV CFNSNTVDDG KSSFFEFKPH  60
SRSNMVPADF NNHACEKSTQ IDGQGKVQSF VSTPLVKSEI AVSSDEISLS SPRQMVSSGA  120
SAHVEVDLDE LNPSGNVATR LQASQVDGRG SGLSVAADRA SDDGYNWRKY GQKLVKGCEF  180
PRSYYKCTHP NCEVKKLFER SHDGQITEIV YKGTHDHPKP QPSRRYSGGT IMSVHEERSD  240
KASLTGREAE RDSTPDLSPI ATNDDSPEAA GFLSNRNIDE VDEDDPFSKR SRKMDLDITP  300
VVKPIREPRV VVQTLSEVDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTNA GCPVRKHVER  360
ASHDPKAVIT TYEGKHNHDV PTARNNSHDM AGPSAAGGQH TRIRHEESDT ISLDLGMGIS  420
PTAENRTNSQ GRMMLNEYGD NQTHTNNSSF KFVHTTPPPV YYGVLNNNSN PYGSRENSND  480
SSSLNHSAYP CPTNIGRILM GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-37162381877Probable WRKY transcription factor 4
2lex_A5e-37162381877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572994.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572994.10.0probable WRKY transcription factor 20 isoform X3
SwissprotQ93WV01e-162WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A1S3EC960.0A0A1S3EC96_CICAR; probable WRKY transcription factor 20 isoform X3
STRINGXP_004506676.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-165WRKY family protein