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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572822.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | YABBY | ||||||||
Protein Properties | Length: 177aa MW: 20095 Da PI: 8.3946 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 195.8 | 1.9e-60 | 6 | 155 | 5 | 168 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkvee...enlksnvekeesastsv 96 ++e+vCyv+CnfCntil+v+vP++sl ++vtvrCGhC++llsvn+ + l++ + l ++ ee +++ s + ++ ast + XP_012572822.1 6 MATERVCYVHCNFCNTILVVNVPYSSLQTMVTVRCGHCANLLSVNMVAS--LQPFSPP--------LPQQIVLEEpsnKEMGSSSKCNKIASTFE 90 579****************************************776554..4444444........33333333300033333333333344444 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihf 168 ++ ++e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ih+ XP_012572822.1 91 PV------VEHEQPRIPP-IRPIEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHH 155 43......4577789888.9**************************************************84 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.4E-66 | 7 | 155 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-7 | 102 | 151 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-4 | 111 | 151 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSMDMMATER VCYVHCNFCN TILVVNVPYS SLQTMVTVRC GHCANLLSVN MVASLQPFSP 60 PLPQQIVLEE PSNKEMGSSS KCNKIASTFE PVVEHEQPRI PPIRPIEKRH RVPSAYNRFI 120 KEEIQRIKAS NPDISHREAF SSAAKNWAHF PHIHHFGKQQ AKLDHGEATH EKSNGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572822.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572822.1 | 1e-131 | putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 7e-65 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1S3EAG3 | 1e-130 | A0A1S3EAG3_CICAR; putative axial regulator YABBY 2 | ||||
STRING | GLYMA12G10210.3 | 8e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 9e-55 | YABBY family protein |
Publications ? help Back to Top | |||
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