PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572674.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 1728aa MW: 195503 Da PI: 5.977

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572674.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	1.9e-17	21	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le++++ ++yps+e r eL klgL++rq ++WF+ rR k++k XP_012572674.1 21 KRKMKTASQLEILEKAYAAEPYPSEEFRVELCVKLGLSDRQLQMWFCHRRLKDRK 75 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-17	5	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.455	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-15	16	76	IPR009057	Homeodomain-like
SMART	SM00389	7.1E-14	18	80	IPR001356	Homeobox domain
Pfam	PF00046	4.1E-15	21	75	IPR001356	Homeobox domain
CDD	cd00086	2.09E-12	21	75	No hit	No description
PROSITE profile	PS50827	17.031	509	568	IPR018501	DDT domain
SMART	SM00571	2.9E-22	509	568	IPR018501	DDT domain
Pfam	PF02791	2.5E-16	510	565	IPR018501	DDT domain
Pfam	PF05066	1.2E-13	689	756	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.9E-9	902	942	IPR028942	WHIM1 domain
Pfam	PF15613	4.9E-12	1084	1156	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1728 aa Download sequence Send to blast
MENCSEVEKK KKPPEEENKV KRKMKTASQL EILEKAYAAE PYPSEEFRVE LCVKLGLSDR 60 QLQMWFCHRR LKDRKAVKTA ASISAPTVEG VEQIEIADVR HDHGLVSVLK LIDHDDLRRV 120 VPQHGMMAYP RMGAGLHAMD SSSSFHEPQL TILELRAIAF VERQLGEALR EDGPILGMEF 180 DSLPPGAFGA PLGVVSIGQH RESELPVEAK VYEHLNKGVS RTLHEYQFIP EQPTVRNEMY 240 ARVTTSIHFS SLDGVPHSGT TLSSGQSFLN GGNDDVPRKN PFVDVTLDTH RVADQVTPID 300 SPLVPSDRRV IHEEELSRFQ RKRKNEEARM QREFEAQEKR IRKELVKQDI LRQKREEQIK 360 KEMERQERER KKEEERLLRE RQREEERFLR EQRREQEQRE KFLQKESIRV ERLRQKEELR 420 REKEAARIKA SSERAIARRM AKESIDLIED EHLELMELAA SKKGLSSILA LDYETMQNLE 480 SYGDGRTSFP PKSVRLKKAF SIQPWSDSDE NVGNLLMVWR FLITFADVLG IWPFTLDELL 540 QAFHDYDPRI LGEIHIALLR SILKDIEDVA RTPTTGLGAN QNNITNSGGG HPQVVEGAYV 600 WGFDIRNWQW HLNPLTWPEI LRQFALSAGF GPLMKKQNIE QVHPCNEGND GKDIISNLRS 660 GAAVENAVAI MQEKGLPNRR TYRPRLTPGT VKYAAFHVLS LEGSRGLNIL ELADKIQKSG 720 LRDLTTSKAP EASIASALSR DTKLFERTAP STYCVRPAYR KDPADSEAIY SAAREKIRVF 780 KSGFVGAEEA DDGERDENSE SDMAENHEID DLGAETNTKK EVSNSEKFNA NTVMRNGKDN 840 GEGFQTPDSC HEKVDEGLAS TVDEGFNKHK DVHTSSEIAV CSHDVTNPIL EGMDVDENTL 900 GEPWAQGLME GEYSDLSVEE RLHALVALIN VAIEGNSIRL ILEERLEAAN TLKKQIWAEA 960 QLDKRRIKDD CFVKLQSFSY LGNKNEPAVT FPSVEGKQCP LHTVHVKIDK ASVTPYDQHE 1020 QINALQGNQN HLQSSLLDVN IQRQDCPTGP DNCSLQQSGY VAEKSRSNFK SYIGHLAEQT 1080 YMYRSLPLGL DRRRNRYWQF ITSASQNDPG CGRIFVELHD GCWKLIDSEE GFDALLASLD 1140 LRGIRESHLH MMLQRIEMSY KNSVRRNVQN GDMGIQNGDT MKKLKTETVK MGTDQDCSAT 1200 SVYVDDLDTS VTSTSFMVQL GRNEVENKDA YMRYWDFEKW MQKQCLNCSV SFAMKFGKKR 1260 CNQLLLMCDL CHRVYFSRGT PSPCPSCHRT STSQDNSSSY ECIARSEGKR KIGTHLFNHP 1320 SSSPFRMRLL KILLSVVEVT LPQEALQPFW TERYRKSWSS KLEASSSPED ILQTLTALEG 1380 AIKREYLAPD YETTSELLGT VCSSGCLPND TIGGGQIPVL PWVPYTTAAV ALRLMELDAC 1440 IFYTSQQKLE SEKDKKNGVV IKLPSKYAAA KNSYNASVIE TSFQAKHAVE NLGALGAGLE 1500 SYSRGQRTRL GRGHSHGQRS QGRVSSSRPT SRKRSTTSNN RKIGKLLGWK GRPNGQGQFC 1560 GRRSIRSWQK PAAKTDVLNS KRDTRNVIKE KTPIFVREEI NESKTEASAL NARNSETSDN 1620 EEDLYQATGD EYDYLVGNNN NGGYQGGFCG KSDNLIEQSH YILDDEEDGD MDNDDNVNDD 1680 KEDGQVDLNV EDYIIGEDSK DAGYNREIIA EQNEEPDGVF STSSDYID

Sequence ? help Back to Top

Protein Sequence Length: 1728 aa Download sequence Send to blast

MENCSEVEKK KKPPEEENKV KRKMKTASQL EILEKAYAAE PYPSEEFRVE LCVKLGLSDR  60
QLQMWFCHRR LKDRKAVKTA ASISAPTVEG VEQIEIADVR HDHGLVSVLK LIDHDDLRRV  120
VPQHGMMAYP RMGAGLHAMD SSSSFHEPQL TILELRAIAF VERQLGEALR EDGPILGMEF  180
DSLPPGAFGA PLGVVSIGQH RESELPVEAK VYEHLNKGVS RTLHEYQFIP EQPTVRNEMY  240
ARVTTSIHFS SLDGVPHSGT TLSSGQSFLN GGNDDVPRKN PFVDVTLDTH RVADQVTPID  300
SPLVPSDRRV IHEEELSRFQ RKRKNEEARM QREFEAQEKR IRKELVKQDI LRQKREEQIK  360
KEMERQERER KKEEERLLRE RQREEERFLR EQRREQEQRE KFLQKESIRV ERLRQKEELR  420
REKEAARIKA SSERAIARRM AKESIDLIED EHLELMELAA SKKGLSSILA LDYETMQNLE  480
SYGDGRTSFP PKSVRLKKAF SIQPWSDSDE NVGNLLMVWR FLITFADVLG IWPFTLDELL  540
QAFHDYDPRI LGEIHIALLR SILKDIEDVA RTPTTGLGAN QNNITNSGGG HPQVVEGAYV  600
WGFDIRNWQW HLNPLTWPEI LRQFALSAGF GPLMKKQNIE QVHPCNEGND GKDIISNLRS  660
GAAVENAVAI MQEKGLPNRR TYRPRLTPGT VKYAAFHVLS LEGSRGLNIL ELADKIQKSG  720
LRDLTTSKAP EASIASALSR DTKLFERTAP STYCVRPAYR KDPADSEAIY SAAREKIRVF  780
KSGFVGAEEA DDGERDENSE SDMAENHEID DLGAETNTKK EVSNSEKFNA NTVMRNGKDN  840
GEGFQTPDSC HEKVDEGLAS TVDEGFNKHK DVHTSSEIAV CSHDVTNPIL EGMDVDENTL  900
GEPWAQGLME GEYSDLSVEE RLHALVALIN VAIEGNSIRL ILEERLEAAN TLKKQIWAEA  960
QLDKRRIKDD CFVKLQSFSY LGNKNEPAVT FPSVEGKQCP LHTVHVKIDK ASVTPYDQHE  1020
QINALQGNQN HLQSSLLDVN IQRQDCPTGP DNCSLQQSGY VAEKSRSNFK SYIGHLAEQT  1080
YMYRSLPLGL DRRRNRYWQF ITSASQNDPG CGRIFVELHD GCWKLIDSEE GFDALLASLD  1140
LRGIRESHLH MMLQRIEMSY KNSVRRNVQN GDMGIQNGDT MKKLKTETVK MGTDQDCSAT  1200
SVYVDDLDTS VTSTSFMVQL GRNEVENKDA YMRYWDFEKW MQKQCLNCSV SFAMKFGKKR  1260
CNQLLLMCDL CHRVYFSRGT PSPCPSCHRT STSQDNSSSY ECIARSEGKR KIGTHLFNHP  1320
SSSPFRMRLL KILLSVVEVT LPQEALQPFW TERYRKSWSS KLEASSSPED ILQTLTALEG  1380
AIKREYLAPD YETTSELLGT VCSSGCLPND TIGGGQIPVL PWVPYTTAAV ALRLMELDAC  1440
IFYTSQQKLE SEKDKKNGVV IKLPSKYAAA KNSYNASVIE TSFQAKHAVE NLGALGAGLE  1500
SYSRGQRTRL GRGHSHGQRS QGRVSSSRPT SRKRSTTSNN RKIGKLLGWK GRPNGQGQFC  1560
GRRSIRSWQK PAAKTDVLNS KRDTRNVIKE KTPIFVREEI NESKTEASAL NARNSETSDN  1620
EEDLYQATGD EYDYLVGNNN NGGYQGGFCG KSDNLIEQSH YILDDEEDGD MDNDDNVNDD  1680
KEDGQVDLNV EDYIIGEDSK DAGYNREIIA EQNEEPDGVF STSSDYID

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572674.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151527	0.0	AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572674.1	0.0	homeobox-DDT domain protein RLT2 isoform X7
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1S3EBC8	0.0	A0A1S3EBC8_CICAR; homeobox-DDT domain protein RLT2 isoform X7
STRING	XP_004505537.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator