PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572673.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 1740aa MW: 196780 Da PI: 5.9368

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	21	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le++++ ++yps+e r eL klgL++rq ++WF+ rR k++k XP_012572673.1 21 KRKMKTASQLEILEKAYAAEPYPSEEFRVELCVKLGLSDRQLQMWFCHRRLKDRK 75 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-17	5	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.455	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-15	16	76	IPR009057	Homeodomain-like
SMART	SM00389	7.1E-14	18	80	IPR001356	Homeobox domain
CDD	cd00086	1.99E-12	21	75	No hit	No description
Pfam	PF00046	4.2E-15	21	75	IPR001356	Homeobox domain
SMART	SM00571	2.9E-22	521	580	IPR018501	DDT domain
PROSITE profile	PS50827	17.031	521	580	IPR018501	DDT domain
Pfam	PF02791	2.5E-16	522	577	IPR018501	DDT domain
Pfam	PF05066	1.2E-13	701	768	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.9E-9	914	954	IPR028942	WHIM1 domain
Pfam	PF15613	4.9E-12	1096	1168	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1740 aa Download sequence Send to blast
MENCSEVEKK KKPPEEENKV KRKMKTASQL EILEKAYAAE PYPSEEFRVE LCVKLGLSDR 60 QLQMWFCHRR LKDRKAVKTA ASISAPTVEG VEQIEIADVR HDHGLVSVLK LIDHDDLRRV 120 VPQHGMMAYP RMGAGLHAMD SSSSFHEPQL TILELRAIAF VERQLGEALR EDGPILGMEF 180 DSLPPGAFGA PLGVVSIGQH RESELPVEAK VYEHLNKGVS RTLHEYQFIP EQPTVRNEMY 240 ARVTTSIHFS SLDGVPHSGT TLSSGQSFLN GNEFAPNVYG VQGGNDDVPR KNPFVDVTLD 300 THRVADQVTP IDSPLVPSDR RVIHEEELSR FQRKRKNEEA RMQREFEAQE KRIRKELVKQ 360 DILRQKREEQ IKKEMERQER ERKKEEERLL RERQREEERF LREQRREQEQ REKFLQKESI 420 RVERLRQKEE LRREKEAARI KASSERAIAR RMAKESIDLI EDEHLELMEL AASKKGLSSI 480 LALDYETMQN LESYGDGRTS FPPKSVRLKK AFSIQPWSDS DENVGNLLMV WRFLITFADV 540 LGIWPFTLDE LLQAFHDYDP RILGEIHIAL LRSILKDIED VARTPTTGLG ANQNNITNSG 600 GGHPQVVEGA YVWGFDIRNW QWHLNPLTWP EILRQFALSA GFGPLMKKQN IEQVHPCNEG 660 NDGKDIISNL RSGAAVENAV AIMQEKGLPN RRTYRPRLTP GTVKYAAFHV LSLEGSRGLN 720 ILELADKIQK SGLRDLTTSK APEASIASAL SRDTKLFERT APSTYCVRPA YRKDPADSEA 780 IYSAAREKIR VFKSGFVGAE EADDGERDEN SESDMAENHE IDDLGAETNT KKEVSNSEKF 840 NANTVMRNGK DNGEGFQTPD SCHEKVDEGL ASTVDEGFNK HKDVHTSSEI AVCSHDVTNP 900 ILEGMDVDEN TLGEPWAQGL MEGEYSDLSV EERLHALVAL INVAIEGNSI RLILEERLEA 960 ANTLKKQIWA EAQLDKRRIK DDCFVKLQSF SYLGNKNEPA VTFPSVEGKQ CPLHTVHVKI 1020 DKASVTPYDQ HEQINALQGN QNHLQSSLLD VNIQRQDCPT GPDNCSLQQS GYVAEKSRSN 1080 FKSYIGHLAE QTYMYRSLPL GLDRRRNRYW QFITSASQND PGCGRIFVEL HDGCWKLIDS 1140 EEGFDALLAS LDLRGIRESH LHMMLQRIEM SYKNSVRRNV QNGDMGIQNG DTMKKLKTET 1200 VKMGTDQDCS ATSVYVDDLD TSVTSTSFMV QLGRNEVENK DAYMRYWDFE KWMQKQCLNC 1260 SVSFAMKFGK KRCNQLLLMC DLCHRVYFSR GTPSPCPSCH RTSTSQDNSS SYECIARSEG 1320 KRKIGTHLFN HPSSSPFRMR LLKILLSVVE VTLPQEALQP FWTERYRKSW SSKLEASSSP 1380 EDILQTLTAL EGAIKREYLA PDYETTSELL GTVCSSGCLP NDTIGGGQIP VLPWVPYTTA 1440 AVALRLMELD ACIFYTSQQK LESEKDKKNG VVIKLPSKYA AAKNSYNASV IETSFQAKHA 1500 VENLGALGAG LESYSRGQRT RLGRGHSHGQ RSQGRVSSSR PTSRKRSTTS NNRKIGKLLG 1560 WKGRPNGQGQ FCGRRSIRSW QKPAAKTDVL NSKRDTRNVI KEKTPIFVRE EINESKTEAS 1620 ALNARNSETS DNEEDLYQAT GDEYDYLVGN NNNGGYQGGF CGKSDNLIEQ SHYILDDEED 1680 GDMDNDDNVN DDKEDGQVDL NVEDYIIGED SKDAGYNREI IAEQNEEPDG VFSTSSDYID

Sequence ? help Back to Top

Protein Sequence Length: 1740 aa Download sequence Send to blast

MENCSEVEKK KKPPEEENKV KRKMKTASQL EILEKAYAAE PYPSEEFRVE LCVKLGLSDR  60
QLQMWFCHRR LKDRKAVKTA ASISAPTVEG VEQIEIADVR HDHGLVSVLK LIDHDDLRRV  120
VPQHGMMAYP RMGAGLHAMD SSSSFHEPQL TILELRAIAF VERQLGEALR EDGPILGMEF  180
DSLPPGAFGA PLGVVSIGQH RESELPVEAK VYEHLNKGVS RTLHEYQFIP EQPTVRNEMY  240
ARVTTSIHFS SLDGVPHSGT TLSSGQSFLN GNEFAPNVYG VQGGNDDVPR KNPFVDVTLD  300
THRVADQVTP IDSPLVPSDR RVIHEEELSR FQRKRKNEEA RMQREFEAQE KRIRKELVKQ  360
DILRQKREEQ IKKEMERQER ERKKEEERLL RERQREEERF LREQRREQEQ REKFLQKESI  420
RVERLRQKEE LRREKEAARI KASSERAIAR RMAKESIDLI EDEHLELMEL AASKKGLSSI  480
LALDYETMQN LESYGDGRTS FPPKSVRLKK AFSIQPWSDS DENVGNLLMV WRFLITFADV  540
LGIWPFTLDE LLQAFHDYDP RILGEIHIAL LRSILKDIED VARTPTTGLG ANQNNITNSG  600
GGHPQVVEGA YVWGFDIRNW QWHLNPLTWP EILRQFALSA GFGPLMKKQN IEQVHPCNEG  660
NDGKDIISNL RSGAAVENAV AIMQEKGLPN RRTYRPRLTP GTVKYAAFHV LSLEGSRGLN  720
ILELADKIQK SGLRDLTTSK APEASIASAL SRDTKLFERT APSTYCVRPA YRKDPADSEA  780
IYSAAREKIR VFKSGFVGAE EADDGERDEN SESDMAENHE IDDLGAETNT KKEVSNSEKF  840
NANTVMRNGK DNGEGFQTPD SCHEKVDEGL ASTVDEGFNK HKDVHTSSEI AVCSHDVTNP  900
ILEGMDVDEN TLGEPWAQGL MEGEYSDLSV EERLHALVAL INVAIEGNSI RLILEERLEA  960
ANTLKKQIWA EAQLDKRRIK DDCFVKLQSF SYLGNKNEPA VTFPSVEGKQ CPLHTVHVKI  1020
DKASVTPYDQ HEQINALQGN QNHLQSSLLD VNIQRQDCPT GPDNCSLQQS GYVAEKSRSN  1080
FKSYIGHLAE QTYMYRSLPL GLDRRRNRYW QFITSASQND PGCGRIFVEL HDGCWKLIDS  1140
EEGFDALLAS LDLRGIRESH LHMMLQRIEM SYKNSVRRNV QNGDMGIQNG DTMKKLKTET  1200
VKMGTDQDCS ATSVYVDDLD TSVTSTSFMV QLGRNEVENK DAYMRYWDFE KWMQKQCLNC  1260
SVSFAMKFGK KRCNQLLLMC DLCHRVYFSR GTPSPCPSCH RTSTSQDNSS SYECIARSEG  1320
KRKIGTHLFN HPSSSPFRMR LLKILLSVVE VTLPQEALQP FWTERYRKSW SSKLEASSSP  1380
EDILQTLTAL EGAIKREYLA PDYETTSELL GTVCSSGCLP NDTIGGGQIP VLPWVPYTTA  1440
AVALRLMELD ACIFYTSQQK LESEKDKKNG VVIKLPSKYA AAKNSYNASV IETSFQAKHA  1500
VENLGALGAG LESYSRGQRT RLGRGHSHGQ RSQGRVSSSR PTSRKRSTTS NNRKIGKLLG  1560
WKGRPNGQGQ FCGRRSIRSW QKPAAKTDVL NSKRDTRNVI KEKTPIFVRE EINESKTEAS  1620
ALNARNSETS DNEEDLYQAT GDEYDYLVGN NNNGGYQGGF CGKSDNLIEQ SHYILDDEED  1680
GDMDNDDNVN DDKEDGQVDL NVEDYIIGED SKDAGYNREI IAEQNEEPDG VFSTSSDYID

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572673.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151527	0.0	AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572673.1	0.0	homeobox-DDT domain protein RLT2 isoform X6
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1S3EB79	0.0	A0A1S3EB79_CICAR; homeobox-DDT domain protein RLT2 isoform X6
STRING	XP_004505537.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator