PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572672.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 1766aa MW: 199578 Da PI: 6.0178

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.5	2e-17	21	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le++++ ++yps+e r eL klgL++rq ++WF+ rR k++k XP_012572672.1 21 KRKMKTASQLEILEKAYAAEPYPSEEFRVELCVKLGLSDRQLQMWFCHRRLKDRK 75 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-17	5	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-15	16	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.455	16	76	IPR001356	Homeobox domain
SMART	SM00389	7.1E-14	18	80	IPR001356	Homeobox domain
CDD	cd00086	2.09E-12	21	75	No hit	No description
Pfam	PF00046	4.2E-15	21	75	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.031	547	606	IPR018501	DDT domain
SMART	SM00571	2.9E-22	547	606	IPR018501	DDT domain
Pfam	PF02791	2.6E-16	548	603	IPR018501	DDT domain
Pfam	PF05066	1.2E-13	727	794	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	5.0E-9	940	980	IPR028942	WHIM1 domain
Pfam	PF15613	5.0E-12	1122	1194	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1766 aa Download sequence Send to blast
MENCSEVEKK KKPPEEENKV KRKMKTASQL EILEKAYAAE PYPSEEFRVE LCVKLGLSDR 60 QLQMWFCHRR LKDRKAVKTA ASISAPTVEG VEQIEIADVR HDHGLVSVLK LIDHDDLRRV 120 VPQHGMMAYP RMGAGLHAMD SSSSFHEPQL TILELRAIAF VERQLGEALR EDGPILGMEF 180 DSLPPGAFGA PLGVVSIGQH RESELPVEAK VYEHLNKGVS RTLHEYQFIP EQPTVRNEMY 240 ARVTTSIHFS SLDGVPHSGT TLSSGQSFLN GNEFAPNVYG VQGQKIPSLN LLSQSQQGRP 300 NNLMFSASGG NDDVPRKNPF VDVTLDTHRV ADQVTPIDSP LVPSDRRVIH EEELSRFQRK 360 RKNEEARMQR EFEAQEKRIR KELVKQDILR QKREEQIKKE MERQERERKK EEERLLRERQ 420 REEERFLREQ RREQEQREKF LQKESIRVER LRQKEELRRE KEAARIKASS ERAIARRMAK 480 ESIDLIEDEH LELMELAASK KGLSSILALD YETMQNLESY GDGRTSFPPK SVRLKKAFSI 540 QPWSDSDENV GNLLMVWRFL ITFADVLGIW PFTLDELLQA FHDYDPRILG EIHIALLRSI 600 LKDIEDVART PTTGLGANQN NITNSGGGHP QVVEGAYVWG FDIRNWQWHL NPLTWPEILR 660 QFALSAGFGP LMKKQNIEQV HPCNEGNDGK DIISNLRSGA AVENAVAIMQ EKGLPNRRTY 720 RPRLTPGTVK YAAFHVLSLE GSRGLNILEL ADKIQKSGLR DLTTSKAPEA SIASALSRDT 780 KLFERTAPST YCVRPAYRKD PADSEAIYSA AREKIRVFKS GFVGAEEADD GERDENSESD 840 MAENHEIDDL GAETNTKKEV SNSEKFNANT VMRNGKDNGE GFQTPDSCHE KVDEGLASTV 900 DEGFNKHKDV HTSSEIAVCS HDVTNPILEG MDVDENTLGE PWAQGLMEGE YSDLSVEERL 960 HALVALINVA IEGNSIRLIL EERLEAANTL KKQIWAEAQL DKRRIKDDCF VKLQSFSYLG 1020 NKNEPAVTFP SVEGKQCPLH TVHVKIDKAS VTPYDQHEQI NALQGNQNHL QSSLLDVNIQ 1080 RQDCPTGPDN CSLQQSGYVA EKSRSNFKSY IGHLAEQTYM YRSLPLGLDR RRNRYWQFIT 1140 SASQNDPGCG RIFVELHDGC WKLIDSEEGF DALLASLDLR GIRESHLHMM LQRIEMSYKN 1200 SVRRNVQNGD MGIQNGDTMK KLKTETVKMG TDQDCSATSV YVDDLDTSVT STSFMVQLGR 1260 NEVENKDAYM RYWDFEKWMQ KQCLNCSVSF AMKFGKKRCN QLLLMCDLCH RVYFSRGTPS 1320 PCPSCHRTST SQDNSSSYEC IARSEGKRKI GTHLFNHPSS SPFRMRLLKI LLSVVEVTLP 1380 QEALQPFWTE RYRKSWSSKL EASSSPEDIL QTLTALEGAI KREYLAPDYE TTSELLGTVC 1440 SSGCLPNDTI GGGQIPVLPW VPYTTAAVAL RLMELDACIF YTSQQKLESE KDKKNGVVIK 1500 LPSKYAAAKN SYNASVIETS FQAKHAVENL GALGAGLESY SRGQRTRLGR GHSHGQRSQG 1560 RVSSSRPTSR KRSTTSNNRK IGKLLGWKGR PNGQGQFCGR RSIRSWQKPA AKTDVLNSKR 1620 DTRNVIKEKT PIFVREEINE SKTEASALNA RNSETSDNEE DLYQATGDEY DYLVGNNNNG 1680 GYQGGFCGKS DNLIEQSHYI LDDEEDGDMD NDDNVNDDKE DGQVDLNVED YIIGEDSKDA 1740 GYNREIIAEQ NEEPDGVFST SSDYID

Sequence ? help Back to Top

Protein Sequence Length: 1766 aa Download sequence Send to blast

MENCSEVEKK KKPPEEENKV KRKMKTASQL EILEKAYAAE PYPSEEFRVE LCVKLGLSDR  60
QLQMWFCHRR LKDRKAVKTA ASISAPTVEG VEQIEIADVR HDHGLVSVLK LIDHDDLRRV  120
VPQHGMMAYP RMGAGLHAMD SSSSFHEPQL TILELRAIAF VERQLGEALR EDGPILGMEF  180
DSLPPGAFGA PLGVVSIGQH RESELPVEAK VYEHLNKGVS RTLHEYQFIP EQPTVRNEMY  240
ARVTTSIHFS SLDGVPHSGT TLSSGQSFLN GNEFAPNVYG VQGQKIPSLN LLSQSQQGRP  300
NNLMFSASGG NDDVPRKNPF VDVTLDTHRV ADQVTPIDSP LVPSDRRVIH EEELSRFQRK  360
RKNEEARMQR EFEAQEKRIR KELVKQDILR QKREEQIKKE MERQERERKK EEERLLRERQ  420
REEERFLREQ RREQEQREKF LQKESIRVER LRQKEELRRE KEAARIKASS ERAIARRMAK  480
ESIDLIEDEH LELMELAASK KGLSSILALD YETMQNLESY GDGRTSFPPK SVRLKKAFSI  540
QPWSDSDENV GNLLMVWRFL ITFADVLGIW PFTLDELLQA FHDYDPRILG EIHIALLRSI  600
LKDIEDVART PTTGLGANQN NITNSGGGHP QVVEGAYVWG FDIRNWQWHL NPLTWPEILR  660
QFALSAGFGP LMKKQNIEQV HPCNEGNDGK DIISNLRSGA AVENAVAIMQ EKGLPNRRTY  720
RPRLTPGTVK YAAFHVLSLE GSRGLNILEL ADKIQKSGLR DLTTSKAPEA SIASALSRDT  780
KLFERTAPST YCVRPAYRKD PADSEAIYSA AREKIRVFKS GFVGAEEADD GERDENSESD  840
MAENHEIDDL GAETNTKKEV SNSEKFNANT VMRNGKDNGE GFQTPDSCHE KVDEGLASTV  900
DEGFNKHKDV HTSSEIAVCS HDVTNPILEG MDVDENTLGE PWAQGLMEGE YSDLSVEERL  960
HALVALINVA IEGNSIRLIL EERLEAANTL KKQIWAEAQL DKRRIKDDCF VKLQSFSYLG  1020
NKNEPAVTFP SVEGKQCPLH TVHVKIDKAS VTPYDQHEQI NALQGNQNHL QSSLLDVNIQ  1080
RQDCPTGPDN CSLQQSGYVA EKSRSNFKSY IGHLAEQTYM YRSLPLGLDR RRNRYWQFIT  1140
SASQNDPGCG RIFVELHDGC WKLIDSEEGF DALLASLDLR GIRESHLHMM LQRIEMSYKN  1200
SVRRNVQNGD MGIQNGDTMK KLKTETVKMG TDQDCSATSV YVDDLDTSVT STSFMVQLGR  1260
NEVENKDAYM RYWDFEKWMQ KQCLNCSVSF AMKFGKKRCN QLLLMCDLCH RVYFSRGTPS  1320
PCPSCHRTST SQDNSSSYEC IARSEGKRKI GTHLFNHPSS SPFRMRLLKI LLSVVEVTLP  1380
QEALQPFWTE RYRKSWSSKL EASSSPEDIL QTLTALEGAI KREYLAPDYE TTSELLGTVC  1440
SSGCLPNDTI GGGQIPVLPW VPYTTAAVAL RLMELDACIF YTSQQKLESE KDKKNGVVIK  1500
LPSKYAAAKN SYNASVIETS FQAKHAVENL GALGAGLESY SRGQRTRLGR GHSHGQRSQG  1560
RVSSSRPTSR KRSTTSNNRK IGKLLGWKGR PNGQGQFCGR RSIRSWQKPA AKTDVLNSKR  1620
DTRNVIKEKT PIFVREEINE SKTEASALNA RNSETSDNEE DLYQATGDEY DYLVGNNNNG  1680
GYQGGFCGKS DNLIEQSHYI LDDEEDGDMD NDDNVNDDKE DGQVDLNVED YIIGEDSKDA  1740
GYNREIIAEQ NEEPDGVFST SSDYID

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572672.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151527	0.0	AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572672.1	0.0	homeobox-DDT domain protein RLT2 isoform X3
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A1S3EA18	0.0	A0A1S3EA18_CICAR; homeobox-DDT domain protein RLT2 isoform X3
STRING	XP_004505537.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator