PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572606.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 385aa MW: 42582.9 Da PI: 9.7207

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	42.3	1.6e-13	311	361	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+ + e ++ XP_012572606.1 311 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEVNEELQRKQAEFVEM 361 79************************************9998776555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-13	307	371	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	309	354	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.5E-11	311	364	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.84E-25	311	365	No hit	No description
SuperFamily	SSF57959	2.32E-10	311	360	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.7E-13	311	360	No hit	No description
PROSITE pattern	PS00036	0	314	329	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MSFTWDAMSV KPPGNVNLVS QSSIYSLTFD ELQNTIGGIG KDFIGSMNMD ELLKNIWTVE 60 ETQALTSSAG GGGEVGEGLN PCGNLQRQGS LTLPRTLSQK KVDEVWRDLM KDNNDGARDN 120 SGSYMPQRQP TLGEVTLEEF LVRAGVVRED TPQAQQIERP NNNGWFSDFS RSNNNTNLLG 180 FQQPNGNNGD LSDNNLVPKH LPLHQSQRPP PLFPKPTNVA FAAHIHLLNN AQLGNPGRRG 240 GMTGVQEHSM NGVGMLGLAA ANVTAPVASP GSKMSPDEIA KHNVDSSTLS PVPYVINRGR 300 KFGSVDKVVE RRQRRMIKNR ESAARSRARK QAYTVELEAE VAKLKEVNEE LQRKQAEFVE 360 MQKNKEDLLR ANKIKYLRRT LTGPW

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MSFTWDAMSV KPPGNVNLVS QSSIYSLTFD ELQNTIGGIG KDFIGSMNMD ELLKNIWTVE  60
ETQALTSSAG GGGEVGEGLN PCGNLQRQGS LTLPRTLSQK KVDEVWRDLM KDNNDGARDN  120
SGSYMPQRQP TLGEVTLEEF LVRAGVVRED TPQAQQIERP NNNGWFSDFS RSNNNTNLLG  180
FQQPNGNNGD LSDNNLVPKH LPLHQSQRPP PLFPKPTNVA FAAHIHLLNN AQLGNPGRRG  240
GMTGVQEHSM NGVGMLGLAA ANVTAPVASP GSKMSPDEIA KHNVDSSTLS PVPYVINRGR  300
KFGSVDKVVE RRQRRMIKNR ESAARSRARK QAYTVELEAE VAKLKEVNEE LQRKQAEFVE  360
MQKNKEDLLR ANKIKYLRRT LTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00038	PBM	Transfer from AT4G34000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572606.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052661	1e-141	BT052661.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-F-15 unknown mRNA.
GenBank	BT140407	1e-141	BT140407.1 Medicago truncatula clone JCVI-FLMt-21B4 unknown mRNA.
GenBank	BT147688	1e-141	BT147688.1 Medicago truncatula clone JCVI-FLMt-21J1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505228.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_004505229.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_012572606.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	1e-99	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1S2YIC0	0.0	A0A1S2YIC0_CICAR; ABSCISIC ACID-INSENSITIVE 5-like protein 5
STRING	XP_004505228.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	9e-98	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]