PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572567.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 1772aa MW: 199604 Da PI: 4.942

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	47	102	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+ r eL++klgLt+rq ++WF+ rR k+kk XP_012572567.1 47 PKRQMKTPFQLETLEKAYALDNYPSEPVRVELSEKLGLTDRQLQMWFCHRRLKDKK 102 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.0E-18	29	103	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.44E-17	33	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	43	103	IPR001356	Homeobox domain
SMART	SM00389	3.6E-19	45	107	IPR001356	Homeobox domain
Pfam	PF00046	5.0E-16	47	102	IPR001356	Homeobox domain
CDD	cd00086	1.45E-14	48	104	No hit	No description
PROSITE profile	PS50827	17.048	557	616	IPR018501	DDT domain
SMART	SM00571	1.5E-22	557	616	IPR018501	DDT domain
Pfam	PF02791	1.6E-17	558	613	IPR018501	DDT domain
Pfam	PF05066	6.5E-15	743	811	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	4.3E-8	946	990	IPR028942	WHIM1 domain
Pfam	PF15613	2.9E-14	1123	1195	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1772 aa Download sequence Send to blast
MEGEAGSEGD SDRKRGGADD NSDENNNNNN DVSNSKIAIS NEGQSKPKRQ MKTPFQLETL 60 EKAYALDNYP SEPVRVELSE KLGLTDRQLQ MWFCHRRLKD KKESAPKKPT RKPVPEPLPD 120 SPVDDLRLGS EHGNEYGSDS GSGSSPYTHM EPRNAMPQSV GYYESPEVEM ELRAIACVED 180 QLGEPLREDG PILGIEFDTL PPDAFGAPIA VTEHQKRPGL SYDSKTYGRH DIRTNKAMAR 240 TSDEYKFLPN QSGIRSDSFG QFSQSHSLSM EGPSRSPQFV LGHERLPKIH ANHGHSSRVS 300 LLSQQDRQGS PYQSPSRDDN VSSPRELYPN TVKVEMNSYL TDCQTVGPEN PKALTSGQFL 360 QNNAMHIDKK RKGDDVKNTR DVEAHEMRIR KELERQDILR RKNEERIKKE MERQDRERRK 420 EEERLMRERQ REEERTKREE KREIERREKY LLKENLKAEK LRQREELRKE KEAERRKAAL 480 EKATARRIAK ESMELIEDEQ LEMMELAASS KGLSSIIRLD FDTLQNIESF RGSLCLFPPE 540 SVKLRKPFAI QPWINSEENV GNLLMVWRFL ITFADVLELW PFTLDEFVQA FHDYDSRLLG 600 EIHVALLKVI IKDIEDVART PCTGLGMNQN GAANSGGGHP EIVEGAYAWG FDIRNWHKHL 660 NQLTWPEIFR QLALSAGYGP QFKKSSITCS RANSKDEGSC EDIISTLRNG SAXXXSAAEN 720 AVAKMQERGL LGPRRSRHRL TPGTVKFAAF HVLSLESGEG LNVLELAEKI QKSGLRDLTT 780 SKTPEASISV ALTRDAKLFE RVAPSTYCVR AAFRKDPADA ESILSEARKK IQIFENGFLA 840 EEDADDVERE ESESEVDEDP EVDDLVNPSS VDKKSEQGND FSSSGKENLG PGGERKDEFN 900 KDLPCFPENG SKNTDCPIAV SGEPVACENL SARNLGDDNM EIDESKSGES WVQGLTEGEY 960 SDLSVEERLN ALAVLVGVAN EGNLIRVVLE DRLEAANALK KQMLAEAQID KARPKDDNVN 1020 KSDFPSINGD KVETQFTYAA VEGNHSPFLG ICNNNNGESP SKTENKSSAL VGQSLSEKLS 1080 SVQDLCIGPD NHQTLLSAQY SKRSRSQLKS YISHLAEEMY IYRSLPLGQD RRHNRYWQFV 1140 ASASCNDPGS GRIFVEYHDG KWRLIDSEEA FDALLNSLDS RGIRESHLRL MLLKIESSFK 1200 ENVQKNAKCA KIGNTDKTCV KNETDETDSS PDRHTRSDSP SSTLCGLSSD TSETSSSFRI 1260 ELGKSESDKK AALRRYQDFQ KWMWKECYNS SVLCAMKYGK KRCKPQVDIC DTCLNFYCLE 1320 DSHCGYCHRT FPSNDGFNFS KHAIQCGDKL PKNICILESS LPLRTRLLKA LLAFIEVSVP 1380 PEALQSIWSE DIRRLWGVKL SRSSSVEELL QILTLFERAL KRDFILSPFS TTADLLGMNT 1440 MSESATRTSM DLESVTVLPW VPRTTSAVSL RLFEFDTSII YAQLEKPEPC EGKEARYIKL 1500 PSRYASAKPA DLDRDGFMKV NSAPTKIVRS SRKRGRVSHD KGRVRKLSKR TDDCKRDNGR 1560 HNFKVTENLG QRLEQQGQGS QGQAGGSGRR TVRKRRAEKR VVEDLLLGHR AANHSYNIDR 1620 EPLRILDEDW NDEKASPIQM EGADMSDSSE EVEYDDNAQA VESDDNVEAV EYDDHNAQAV 1680 ESDDNVEAVE YGQGNWEIGF NGTPNRWNRD LVGMGDEEDA EVSEDDNGIE ENEVEEEEDS 1740 EADVMSEGSD GMANRVVNEE ISDSSDSEDS SD

Sequence ? help Back to Top

Protein Sequence Length: 1772 aa Download sequence Send to blast

MEGEAGSEGD SDRKRGGADD NSDENNNNNN DVSNSKIAIS NEGQSKPKRQ MKTPFQLETL  60
EKAYALDNYP SEPVRVELSE KLGLTDRQLQ MWFCHRRLKD KKESAPKKPT RKPVPEPLPD  120
SPVDDLRLGS EHGNEYGSDS GSGSSPYTHM EPRNAMPQSV GYYESPEVEM ELRAIACVED  180
QLGEPLREDG PILGIEFDTL PPDAFGAPIA VTEHQKRPGL SYDSKTYGRH DIRTNKAMAR  240
TSDEYKFLPN QSGIRSDSFG QFSQSHSLSM EGPSRSPQFV LGHERLPKIH ANHGHSSRVS  300
LLSQQDRQGS PYQSPSRDDN VSSPRELYPN TVKVEMNSYL TDCQTVGPEN PKALTSGQFL  360
QNNAMHIDKK RKGDDVKNTR DVEAHEMRIR KELERQDILR RKNEERIKKE MERQDRERRK  420
EEERLMRERQ REEERTKREE KREIERREKY LLKENLKAEK LRQREELRKE KEAERRKAAL  480
EKATARRIAK ESMELIEDEQ LEMMELAASS KGLSSIIRLD FDTLQNIESF RGSLCLFPPE  540
SVKLRKPFAI QPWINSEENV GNLLMVWRFL ITFADVLELW PFTLDEFVQA FHDYDSRLLG  600
EIHVALLKVI IKDIEDVART PCTGLGMNQN GAANSGGGHP EIVEGAYAWG FDIRNWHKHL  660
NQLTWPEIFR QLALSAGYGP QFKKSSITCS RANSKDEGSC EDIISTLRNG SAXXXSAAEN  720
AVAKMQERGL LGPRRSRHRL TPGTVKFAAF HVLSLESGEG LNVLELAEKI QKSGLRDLTT  780
SKTPEASISV ALTRDAKLFE RVAPSTYCVR AAFRKDPADA ESILSEARKK IQIFENGFLA  840
EEDADDVERE ESESEVDEDP EVDDLVNPSS VDKKSEQGND FSSSGKENLG PGGERKDEFN  900
KDLPCFPENG SKNTDCPIAV SGEPVACENL SARNLGDDNM EIDESKSGES WVQGLTEGEY  960
SDLSVEERLN ALAVLVGVAN EGNLIRVVLE DRLEAANALK KQMLAEAQID KARPKDDNVN  1020
KSDFPSINGD KVETQFTYAA VEGNHSPFLG ICNNNNGESP SKTENKSSAL VGQSLSEKLS  1080
SVQDLCIGPD NHQTLLSAQY SKRSRSQLKS YISHLAEEMY IYRSLPLGQD RRHNRYWQFV  1140
ASASCNDPGS GRIFVEYHDG KWRLIDSEEA FDALLNSLDS RGIRESHLRL MLLKIESSFK  1200
ENVQKNAKCA KIGNTDKTCV KNETDETDSS PDRHTRSDSP SSTLCGLSSD TSETSSSFRI  1260
ELGKSESDKK AALRRYQDFQ KWMWKECYNS SVLCAMKYGK KRCKPQVDIC DTCLNFYCLE  1320
DSHCGYCHRT FPSNDGFNFS KHAIQCGDKL PKNICILESS LPLRTRLLKA LLAFIEVSVP  1380
PEALQSIWSE DIRRLWGVKL SRSSSVEELL QILTLFERAL KRDFILSPFS TTADLLGMNT  1440
MSESATRTSM DLESVTVLPW VPRTTSAVSL RLFEFDTSII YAQLEKPEPC EGKEARYIKL  1500
PSRYASAKPA DLDRDGFMKV NSAPTKIVRS SRKRGRVSHD KGRVRKLSKR TDDCKRDNGR  1560
HNFKVTENLG QRLEQQGQGS QGQAGGSGRR TVRKRRAEKR VVEDLLLGHR AANHSYNIDR  1620
EPLRILDEDW NDEKASPIQM EGADMSDSSE EVEYDDNAQA VESDDNVEAV EYDDHNAQAV  1680
ESDDNVEAVE YGQGNWEIGF NGTPNRWNRD LVGMGDEEDA EVSEDDNGIE ENEVEEEEDS  1740
EADVMSEGSD GMANRVVNEE ISDSSDSEDS SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	102	RRLKDKKE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572567.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572567.1	0.0	LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1-like
TrEMBL	A0A1S3E9R5	0.0	A0A1S3E9R5_CICAR; LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1-like
STRING	GLYMA13G24370.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1