PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572342.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 407aa MW: 45607.4 Da PI: 7.5968

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.8	1.5e-10	102	143	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_012572342.1 102 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDL 143 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-7	99	165	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	101	145	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.0E-8	101	145	No hit	No description
Pfam	PF00170	9.8E-8	102	144	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.06E-7	103	145	No hit	No description
CDD	cd14708	2.91E-21	103	153	No hit	No description
PROSITE pattern	PS00036	0	106	121	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-26	184	258	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MFPSWPMRFH QSSIGGTNNK SGGESSDSAL SSKNENPFEP ESPLSKKASS FCSSDQLQHL 60 QLQQDMTNNN DVIKTASSPK SAHEKLQRKG GGSTSDNKPL DAKTLRRLAQ NREAARKSRL 120 RKKAYVQQLE SSRLKLTQLE QDLQRARSQG MFMDWSGGVG SNISSGAMFD MEYARWLEED 180 NRLLTELRNG LEAALSDNEM RVMVEGYLCH YDEVFRVKGV TAKADVFHVI NGGWTSQAER 240 CFLWIGGFRP SEIIMMLIQQ LEAVAEQQIM GMYGLRHSSQ QAEEALSQGL DQLQQSVVDT 300 IAGAPLVDGV QQMVVAVGKL ANLEGFLRQA DNLRQQTLHQ LCRLLTVRQA ARSFLVIGEY 360 YARLRALSSL WASRSRDQTI ITSDENSCQT TTDMQMLQPS HNHFSSF

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MFPSWPMRFH QSSIGGTNNK SGGESSDSAL SSKNENPFEP ESPLSKKASS FCSSDQLQHL  60
QLQQDMTNNN DVIKTASSPK SAHEKLQRKG GGSTSDNKPL DAKTLRRLAQ NREAARKSRL  120
RKKAYVQQLE SSRLKLTQLE QDLQRARSQG MFMDWSGGVG SNISSGAMFD MEYARWLEED  180
NRLLTELRNG LEAALSDNEM RVMVEGYLCH YDEVFRVKGV TAKADVFHVI NGGWTSQAER  240
CFLWIGGFRP SEIIMMLIQQ LEAVAEQQIM GMYGLRHSSQ QAEEALSQGL DQLQQSVVDT  300
IAGAPLVDGV QQMVVAVGKL ANLEGFLRQA DNLRQQTLHQ LCRLLTVRQA ARSFLVIGEY  360
YARLRALSSL WASRSRDQTI ITSDENSCQT TTDMQMLQPS HNHFSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572342.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235234	5e-36	AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.
GenBank	AP015040	5e-36	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572342.1	0.0	transcription factor TGA9-like isoform X7
Refseq	XP_012572343.1	0.0	transcription factor TGA9-like isoform X7
Refseq	XP_027187419.1	0.0	transcription factor TGA9-like isoform X7
Swissprot	Q93XM6	1e-173	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3E944	0.0	A0A1S3E944_CICAR; transcription factor TGA9-like isoform X7
STRING	XP_004487499.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-160	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]