PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572340.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 472aa MW: 52652.1 Da PI: 6.5898

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	167	208	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_012572340.1 167 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDL 208 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-7	164	230	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.9E-8	166	210	No hit	No description
PROSITE profile	PS50217	9.232	166	210	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	167	209	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.02E-21	168	218	No hit	No description
SuperFamily	SSF57959	9.64E-7	168	210	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-26	249	323	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence Send to blast
MASQRIGELD FSEPYGIHHR INNPSSSLIN DQGSGFDFGE LEEAIGLQGV KIRNDETKAC 60 KPAATLEMFP SWPMRFHQSS IGGTNNKSGG ESSDSALSSK NENPFEPESP LSKKASSFCS 120 SDQLQHLQLQ QDMTNNNDVI KTASSPKSAH EKRKGGGSTS DNKPLDAKTL RRLAQNREAA 180 RKSRLRKKAY VQQLESSRLK LTQLEQDLQR ARSQGMFMDW SGGVGSNISS GAMFDMEYAR 240 WLEEDNRLLT ELRNGLEAAL SDNEMRVMVE GYLCHYDEVF RVKGVTAKAD VFHVINGGWT 300 SQAERCFLWI GGFRPSEIIM MLIQQLEAVA EQQIMGMYGL RHSSQQAEEA LSQGLDQLQQ 360 SVVDTIAGAP LVDGVQQMVV AVGKLANLEG FLRQADNLRQ QTLHQLCRLL TVRQAARSFL 420 VIGEYYARLR ALSSLWASRS RDQTIITSDE NSCQTTTDMQ MLQPSHNHFS SF

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence Send to blast

MASQRIGELD FSEPYGIHHR INNPSSSLIN DQGSGFDFGE LEEAIGLQGV KIRNDETKAC  60
KPAATLEMFP SWPMRFHQSS IGGTNNKSGG ESSDSALSSK NENPFEPESP LSKKASSFCS  120
SDQLQHLQLQ QDMTNNNDVI KTASSPKSAH EKRKGGGSTS DNKPLDAKTL RRLAQNREAA  180
RKSRLRKKAY VQQLESSRLK LTQLEQDLQR ARSQGMFMDW SGGVGSNISS GAMFDMEYAR  240
WLEEDNRLLT ELRNGLEAAL SDNEMRVMVE GYLCHYDEVF RVKGVTAKAD VFHVINGGWT  300
SQAERCFLWI GGFRPSEIIM MLIQQLEAVA EQQIMGMYGL RHSSQQAEEA LSQGLDQLQQ  360
SVVDTIAGAP LVDGVQQMVV AVGKLANLEG FLRQADNLRQ QTLHQLCRLL TVRQAARSFL  420
VIGEYYARLR ALSSLWASRS RDQTIITSDE NSCQTTTDMQ MLQPSHNHFS SF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572340.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235234	6e-36	AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.
GenBank	AP015040	6e-36	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572340.1	0.0	transcription factor TGA9-like isoform X6
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3E943	0.0	A0A1S3E943_CICAR; transcription factor TGA9-like isoform X6
STRING	XP_004487499.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]