PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012572338.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bZIP

Protein Properties

Length: 474aa MW: 52893.4 Da PI: 6.5898

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012572338.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.5	1.9e-10	169	210	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_012572338.1 169 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDL 210 6889*************************9877777766666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.6E-7	166	232	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.9E-8	168	212	No hit	No description
PROSITE profile	PS50217	9.232	168	212	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.2E-7	169	211	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.64E-7	170	212	No hit	No description
CDD	cd14708	1.39E-21	170	220	No hit	No description
PROSITE pattern	PS00036	0	173	188	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.1E-26	251	325	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MASQRIGELD FSEPYGIHHR INNPSSSLIN DQGSGFDFGE LEEAIGLQGV KIRNDETKAC 60 KPAATLEMFP SWPMRFHQSS IGGTNNKSGG ESSDSALSSK NENPFEPESP LSKKASSFCS 120 SDQLQHLQLQ QDMTNNNDVI KTASSPKSAH EKLQRKGGGS TSDNKPLDAK TLRRLAQNRE 180 AARKSRLRKK AYVQQLESSR LKLTQLEQDL QRARSQGMFM DWSGGVGSNI SSGAMFDMEY 240 ARWLEEDNRL LTELRNGLEA ALSDNEMRVM VEGYLCHYDE VFRVKGVTAK ADVFHVINGG 300 WTSQAERCFL WIGGFRPSEI IMMLIQQLEA VAEQQIMGMY GLRHSSQQAE EALSQGLDQL 360 QQSVVDTIAG APLVDGVQQM VVAVGKLANL EGFLRQADNL RQQTLHQLCR LLTVRQAARS 420 FLVIGEYYAR LRALSSLWAS RSRDQTIITS DENSCQTTTD MQMLQPSHNH FSSF

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MASQRIGELD FSEPYGIHHR INNPSSSLIN DQGSGFDFGE LEEAIGLQGV KIRNDETKAC  60
KPAATLEMFP SWPMRFHQSS IGGTNNKSGG ESSDSALSSK NENPFEPESP LSKKASSFCS  120
SDQLQHLQLQ QDMTNNNDVI KTASSPKSAH EKLQRKGGGS TSDNKPLDAK TLRRLAQNRE  180
AARKSRLRKK AYVQQLESSR LKLTQLEQDL QRARSQGMFM DWSGGVGSNI SSGAMFDMEY  240
ARWLEEDNRL LTELRNGLEA ALSDNEMRVM VEGYLCHYDE VFRVKGVTAK ADVFHVINGG  300
WTSQAERCFL WIGGFRPSEI IMMLIQQLEA VAEQQIMGMY GLRHSSQQAE EALSQGLDQL  360
QQSVVDTIAG APLVDGVQQM VVAVGKLANL EGFLRQADNL RQQTLHQLCR LLTVRQAARS  420
FLVIGEYYAR LRALSSLWAS RSRDQTIITS DENSCQTTTD MQMLQPSHNH FSSF

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012572338.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235234	6e-36	AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence.
GenBank	AP015040	6e-36	AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012572338.1	0.0	transcription factor TGA9-like isoform X5
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A1S3EAA8	0.0	A0A1S3EAA8_CICAR; transcription factor TGA9-like isoform X5
STRING	XP_004487499.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-180	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]