PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572326.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bZIP | ||||||||
Protein Properties | Length: 478aa MW: 53329.9 Da PI: 6.5916 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 32.5 | 1.9e-10 | 173 | 214 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L XP_012572326.1 173 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDL 214 6889*************************9877777766666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 9.6E-7 | 170 | 236 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.232 | 172 | 216 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.0E-8 | 172 | 216 | No hit | No description |
Pfam | PF00170 | 1.2E-7 | 173 | 215 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 9.44E-22 | 174 | 224 | No hit | No description |
SuperFamily | SSF57959 | 9.64E-7 | 174 | 216 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 177 | 192 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 3.1E-26 | 255 | 329 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MASQRIGELD FSEPYGIHHR INNPSSSLIN DQGSGFDFGE LEEAIGLQGV KIRNDETKAS 60 FFTGKPAATL EMFPSWPMRF HQSSIGGTNN KSGGESSDSA LSSKNENPFE PESPLSKKAS 120 SFCSSDQLQH LQLQQDMTNN NDVIKTASSP KSAHEKLQRK GGGSTSDNKP LDAKTLRRLA 180 QNREAARKSR LRKKAYVQQL ESSRLKLTQL EQDLQRARSQ GMFMDWSGGV GSNISSGAMF 240 DMEYARWLEE DNRLLTELRN GLEAALSDNE MRVMVEGYLC HYDEVFRVKG VTAKADVFHV 300 INGGWTSQAE RCFLWIGGFR PSEIIMMLIQ QLEAVAEQQI MGMYGLRHSS QQAEEALSQG 360 LDQLQQSVVD TIAGAPLVDG VQQMVVAVGK LANLEGFLRQ ADNLRQQTLH QLCRLLTVRQ 420 AARSFLVIGE YYARLRALSS LWASRSRDQT IITSDENSCQ TTTDMQMLQP SHNHFSSF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572326.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235234 | 6e-36 | AC235234.1 Glycine max strain Williams 82 clone GM_WBb0028B23, complete sequence. | |||
GenBank | AP015040 | 6e-36 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572326.1 | 0.0 | transcription factor TGA9-like isoform X2 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A1S3EBH6 | 0.0 | A0A1S3EBH6_CICAR; transcription factor TGA9-like isoform X2 | ||||
STRING | XP_004487499.1 | 0.0 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 1e-180 | bZIP family protein |
Publications ? help Back to Top | |||
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