PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 159aa    MW: 18484.6 Da    PI: 9.6
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.1e-29102159158
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     +dDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnh
  XP_012572230.1 102 MDDGYKWRKYGKKSVKNNPNLRNYYKCSSLGCNVKKRVERDRDDSSYVITTYEGVHNH 159
                     69*******************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-3190159IPR003657WRKY domain
SuperFamilySSF1182902.22E-2694159IPR003657WRKY domain
PROSITE profilePS5081129.28797159IPR003657WRKY domain
SMARTSM007748.5E-30102159IPR003657WRKY domain
PfamPF031067.3E-23103159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MDYNFVNPHP NPNFVHSTHM VPSSPHFILS DYLRLDDIFI DQESHSQSIE SLYKVTFSHA  60
NQGSNHATSK NNNIKYKNGI KRNKGEVGPN IAFRTRSELE IMDDGYKWRK YGKKSVKNNP  120
NLRNYYKCSS LGCNVKKRVE RDRDDSSYVI TTYEGVHNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2492159774Probable WRKY transcription factor 4
2lex_A4e-2492159774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572230.11e-116probable WRKY transcription factor 51
SwissprotQ93WU92e-40WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBLA0A1S3E8T71e-115A0A1S3E8T7_CICAR; probable WRKY transcription factor 51
STRINGAET045948e-88(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-40WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Yan C, et al.
    Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis.
    Mol. Cell, 2018. 70(1): p. 136-149.e7
    [PMID:29625034]