PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012572138.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 291aa    MW: 33337.6 Da    PI: 7.1642
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012572138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29126183359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D ++WrKYGqK++kgs++prsYY+C+++ +C ++k+ve+s+ dpkv  +tY+ eHnh+
  XP_012572138.1 126 DAWSWRKYGQKPIKGSPYPRSYYKCSTSkKCLARKQVEKSHLDPKVYLVTYNAEHNHP 183
                     99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-29110185IPR003657WRKY domain
PROSITE profilePS5081131.927119185IPR003657WRKY domain
SuperFamilySSF1182901.44E-24120185IPR003657WRKY domain
SMARTSM007741.3E-33124184IPR003657WRKY domain
PfamPF031064.0E-24126183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDELAFLMDW DFEAFNEPPT TNNPYYFSQQ ENELFGNFPE FSQTTNVFID ELEQISKPFY  60
PLSSQTNIVT NSLTIPKEEL KEIKASERIA SQDLQVPAAS KCKRSKKKQN KNIVKKVVAE  120
DGVLCDAWSW RKYGQKPIKG SPYPRSYYKC STSKKCLARK QVEKSHLDPK VYLVTYNAEH  180
NHPQPTRRNS LAGITRKNNV LVTNSSRKLI IDQKTCSLNS SIATHDSPKT HLVKVEDEVL  240
VTSVQQSKGL VKYEEDHDLL EWLNSAQLSD DGWIPSKELD EFIGLEYQSH A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-18116185977Probable WRKY transcription factor 4
2lex_A2e-18116185977Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012572138.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572138.10.0probable WRKY transcription factor 29
TrEMBLA0A1S3E9R20.0A0A1S3E9R2_CICAR; probable WRKY transcription factor 29
STRINGXP_007160109.16e-89(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62173150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-44WRKY family protein