PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

FAR1

Protein Properties

Length: 882aa MW: 99729.5 Da PI: 6.6657

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012571757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.4	7.4e-16	62	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYAk++GFs ++ + ++sk +g + +fvC +eg +++ +++ C+a++++++++++kw+vtkl++eH+H+++ XP_012571757.1 62 FYDEYAKHMGFSSKVGSRTRSKADGPNMYVEFVCGREGLKKRFNDS--------------CDAMIRIELKDQNKWVVTKLVKEHSHSMV 136 9************************************9997766..............************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-12	62	136	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.3E-29	277	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.892	555	591	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.5E-10	564	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-9	566	593	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MDVHVINVED ESDHQARADD GDTEPSDGEI NNAESFGFYV EDGISEPYLG MEFDSEDVAK 60 TFYDEYAKHM GFSSKVGSRT RSKADGPNMY VEFVCGREGL KKRFNDSCDA MIRIELKDQN 120 KWVVTKLVKE HSHSMVNSSK TQNLHPRKHF SSVGRTMPET YQGVGLVPSG VLYVSMDGNH 180 ISNQNTCGML NIHAANVAEP SQPVKNATLM NYTTRAPFQN RTLGKDAHNL LEYFKKMQAE 240 NPGFFYAIQL DEDNHMSNVF WADARSRTAY SHFGDAVHLD TTYRVNQYKV PFAPFTGVNH 300 HGQTVLFGCA LLLDDSEASL LWLFKTFLTA MNARQPVSIT TDQDRAIQAA ASQVFPQARH 360 CINMWHVLRE GQEKLAHVCL AHPNFQGELY NSINLTETIE EFESSWNSIL DKYELRRNDW 420 LQSLYNARAQ WVPAYFRDSF FAAISPNQGF GGSFFYGYVN PLMTLPLFFR QYERAVESWI 480 EKEIEADFET ICTTPDLKTP SPMEKQAANL YTKKIFLKFQ EELVETFVYT ANIIEGDEVN 540 STFKVAKFED VHKAYIVAFN HAELRASCSC QMFEYSGILC RHILTVFTMT NVLTLPSHYI 600 LKRWTRNAKS SAGLDERTAE LHGKESLTSR YSNLCREAIR YAEEGAVTVE TFNAAMTGLK 660 DGGKKVAAMK RSVAKATPNN QASGTTYNDK KTTNSTLDTT PLLWPRQDEV TRRFNLNDSG 720 GPVQSVADLN FPRMAPVSLH RDDVPSGNMV VLPCLKSMTW VMENKNSSPQ NKVAVINLKL 780 QDYSRTPSKE SEVKFQLSRV SLEPMLKSMA YISEQLSRPA NKVAVINLKL QDADTTSGES 840 EVKFQVSRDT LGAMLRSMAY IREQLSHAGE AQSEPLLKKH RK

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MDVHVINVED ESDHQARADD GDTEPSDGEI NNAESFGFYV EDGISEPYLG MEFDSEDVAK  60
TFYDEYAKHM GFSSKVGSRT RSKADGPNMY VEFVCGREGL KKRFNDSCDA MIRIELKDQN  120
KWVVTKLVKE HSHSMVNSSK TQNLHPRKHF SSVGRTMPET YQGVGLVPSG VLYVSMDGNH  180
ISNQNTCGML NIHAANVAEP SQPVKNATLM NYTTRAPFQN RTLGKDAHNL LEYFKKMQAE  240
NPGFFYAIQL DEDNHMSNVF WADARSRTAY SHFGDAVHLD TTYRVNQYKV PFAPFTGVNH  300
HGQTVLFGCA LLLDDSEASL LWLFKTFLTA MNARQPVSIT TDQDRAIQAA ASQVFPQARH  360
CINMWHVLRE GQEKLAHVCL AHPNFQGELY NSINLTETIE EFESSWNSIL DKYELRRNDW  420
LQSLYNARAQ WVPAYFRDSF FAAISPNQGF GGSFFYGYVN PLMTLPLFFR QYERAVESWI  480
EKEIEADFET ICTTPDLKTP SPMEKQAANL YTKKIFLKFQ EELVETFVYT ANIIEGDEVN  540
STFKVAKFED VHKAYIVAFN HAELRASCSC QMFEYSGILC RHILTVFTMT NVLTLPSHYI  600
LKRWTRNAKS SAGLDERTAE LHGKESLTSR YSNLCREAIR YAEEGAVTVE TFNAAMTGLK  660
DGGKKVAAMK RSVAKATPNN QASGTTYNDK KTTNSTLDTT PLLWPRQDEV TRRFNLNDSG  720
GPVQSVADLN FPRMAPVSLH RDDVPSGNMV VLPCLKSMTW VMENKNSSPQ NKVAVINLKL  780
QDYSRTPSKE SEVKFQLSRV SLEPMLKSMA YISEQLSRPA NKVAVINLKL QDADTTSGES  840
EVKFQVSRDT LGAMLRSMAY IREQLSHAGE AQSEPLLKKH RK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012571757.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146743	0.0	AC146743.11 Medicago truncatula clone mth2-12k22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004501994.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_012571757.1	0.0	protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1S2YAM6	0.0	A0A1S2YAM6_CICAR; protein FAR1-RELATED SEQUENCE 3-like
STRING	XP_004501994.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]