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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_012571729.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family |
MYB |
Protein Properties |
Length: 411aa MW: 47659.9 Da PI: 9.4923 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_012571729.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 53.3 | 6.4e-17 | 182 | 228 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT +Ed ll+++v+++G + W+ Ia+ ++ R +kqc++rw+++l
XP_012571729.1 182 KGQWTVQEDRLLIQLVEKYGLRKWSHIAQLFP-DRIGKQCRERWHNHL 228
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 50.1 | 6.2e-16 | 236 | 276 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
W++eEd++l++a+ + G++ W+ Ia+ + gRt++++k++w+
XP_012571729.1 236 IWSEEEDKILIKAHSEIGNK-WAEIAKILA-GRTENSIKNHWN 276
6*******************.*********.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MDLETKLTQI YASKSQHSQE NYYTKPNMKN HENTFGGFPN SSQGFMQDFN HINKFNVNGS 60 FFNPVSGVQT TNFDPCDNFT YDFKPNLLEN NGSGNAYAMD NFLYGGYGLN IFQRNNNKVE 120 MLVTNQQNYF PFNINSQKTK PLNFVVPDKI SCISPMNYYK RIGMNRNNAR KTEKVQKSNI 180 VKGQWTVQED RLLIQLVEKY GLRKWSHIAQ LFPDRIGKQC RERWHNHLRP DIKKDIWSEE 240 EDKILIKAHS EIGNKWAEIA KILAGRTENS IKNHWNATKR RQYSKRKCRS KYPRGTLLQE 300 YIKSLNLDKN PPKDYRRKST TNATLFKNKT SQITLSQTPH QQFCLNQCLV PSSDFDDVPD 360 FESLFQDGCS IDSLLEDIKS GSSVNLVDET DIMGSIMFGV EVKKEMVSLL N
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC131239 | 4e-86 | AC131239.20 Medicago truncatula clone mth2-18o15, complete sequence. |
GenBank | AC157538 | 4e-86 | AC157538.19 Medicago truncatula clone mth2-150a17, complete sequence. |
GenBank | CT954236 | 4e-86 | CT954236.4 M.truncatula DNA sequence from clone MTH2-3H12 on chromosome 3, complete sequence. |