 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_012571574.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 384aa MW: 44048.2 Da PI: 6.556 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_012571574.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 83.7 | 1.1e-26 | 81 | 127 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+
XP_012571574.1 81 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRAT 127
68*****************************************9865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 384 aa
Download sequence Send
to blast |
MLLNSSSYYY LHYINRHLFL SFSALHHVTF YKCLKQTKFN HLNFFLISLF SSILATYVSK 60
FISLMPHEVN GKMGRVKLQI KKIENTTNRQ VTFSKRRNGL IKKAYELSVL CDVDVALIMF 120
SPSGRATLFS GNRSIEEIIE RYINLPDIER GRMHNQEHIR KFLSKLKVET EQICQPPSPV 180
ITDSQLKEIQ REIFICKSQL EEMENRLRIF EGDPSEITTL CEAEYREQVL QETLKQVQLR 240
KCILEEEHIS HASPQVHLTK TVDGFVAGTI ENALAWFPQE DTNNQILNFA NVYDPSPLSD 300
QQSLSTIADM VTPASTRLHS TFMDHNCQLS PRDVAEADIN NTISPQFGHV MDINSSSWEH 360
LHHLESGALS VAETGEGPYV QLQT
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6byy_B | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6byy_C | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6byy_D | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6bz1_A | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6bz1_B | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6bz1_C | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6bz1_D | 3e-15 | 73 | 125 | 1 | 53 | MEF2 CHIMERA |
| 6c9l_A | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 3e-15 | 73 | 125 | 1 | 53 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975443 | 1e-48 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
