PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571402.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YA
Protein Properties Length: 339aa    MW: 37641.2 Da    PI: 8.2753
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571402.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.75.9e-31180236158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VN+KQy++I++RRq Rakle+++kl +k rkpylheSRh hAl+R+Rg gGrF
  XP_012571402.1 180 EEPIFVNSKQYHAIMRRRQCRAKLEAHNKL-IKDRKPYLHESRHVHALKRARGAGGRF 236
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.0E-36178239IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.981179239IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.0E-26181236IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.2E-23182204IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860184204IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.2E-23213236IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKCLCEKDSG LCSAHSTSHH VFGCPSWGTS SESEVQQTSM SKTLSLKVDA IPQKCLKSKA  60
LSFQFQEHDS SSTQSSGQSY PEVGSPQSGQ IPFQHSSSTS STFKITEGND MGCLIETSIG  120
SPNLTIHPPP MDHSQSLAHF AFHFADPCYS GLLAASYGPQ YKLLGTAAPV RIPLPSDLAE  180
EPIFVNSKQY HAIMRRRQCR AKLEAHNKLI KDRKPYLHES RHVHALKRAR GAGGRFLNAK  240
KLQESKLDSP NHGQKSVSNY TCLNLNGNMV ESKMHDEVEN YRDGASYASN RNEMLEQQEE  300
LEFRLCSYPS SQSGRNMQDY TADKGVGANE RRHRLSVLM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-21180250272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182691e-156JQ918269.1 Medicago truncatula nuclear transcription factor Y subunit A4 (NF-YA4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012571402.10.0nuclear transcription factor Y subunit A-3-like
SwissprotQ93ZH27e-54NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A1S3E6G50.0A0A1S3E6G5_CICAR; nuclear transcription factor Y subunit A-3-like
STRINGXP_004486861.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101202541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-55nuclear factor Y, subunit A3