PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012571103.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NF-YC
Protein Properties Length: 278aa    MW: 30705.6 Da    PI: 4.5535
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012571103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC39.99.4e-131693098
           NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl div r
  XP_012571103.1  1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVQSYNVFDFLRDIVGR 69
                    899***************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-18168IPR009072Histone-fold
SuperFamilySSF471131.21E-19170IPR009072Histone-fold
PfamPF008081.7E-12154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNALHL KHCVQSYNVF  60
DFLRDIVGRV PDYGHGHSHS EAGADDRAVP KRRKAAAGDD GNDSDEETKR SKMLELSHTG  120
GTGRGRGRGR GRGRGRGART AEKETFHQQV ESEPCTSIQQ SSKEVPDASM AIDNVPEQKD  180
LPKENNNAVH EESTQSLRNI DLNANLHENE DKLNTDTTIT QASLPEPAAT TTTDMQHEEI  240
PGWSLSDVDK MAIDTLQLAA NINSRIEEDE EDYDEEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125135RGRGRGRGRGR
2127136RGRGRGRGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012571103.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9183000.0JQ918300.1 Medicago truncatula nuclear transcription factor Y subunit C8 (NF-YC8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004499778.10.0dr1-associated corepressor homolog isoform X1
TrEMBLA0A1S2Y5S00.0A0A1S2Y5S0_CICAR; dr1-associated corepressor homolog isoform X1
STRINGXP_004499778.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-58nuclear factor Y, subunit C11