PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012571036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 730aa MW: 79297.8 Da PI: 6.5349 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.7e-32 | 293 | 350 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k XP_012571036.1 293 EDGYNWRKYGQKQVKGSEYPRSYYKCTHTNCPVKKKVERSH-EGHITEIIYKGAHNHPK 350 7****************************************.***************85 PP | |||||||
2 | WRKY | 102.8 | 1.9e-32 | 509 | 567 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ XP_012571036.1 509 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 567 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 8.89E-26 | 290 | 351 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.5E-29 | 290 | 351 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-36 | 292 | 350 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.433 | 293 | 351 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-25 | 293 | 349 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 9.3E-37 | 494 | 569 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 501 | 569 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.32 | 504 | 569 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 509 | 568 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-25 | 510 | 567 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MAGIDDNVTL NVDWGLPCPS PRSLFSRMLD GDNGSGGTGA QDGDSGAQLS DTSYPTEHKS 60 SSRGGLVERI AARAGFNAPR LNTESIRSTD LSLNSEIQSP YLTIPPGLSP TTLLDSPVFL 120 ANSLAQPSPT TGKFPFVSSV NVPEKSKDNC FTDIYASSFA FKPTSDLGPS FYNSAGRKSS 180 FNLQINSTAL PHQSLHGIEA SVHSENSFQP QRIDAVKVQA ENKSSFHLQA NFSDSQPQKD 240 NGIKMFSPDQ RAFDTVGGSV EHATPMEEQA DEEGEQRVNG DSLVAGVGGT PSEDGYNWRK 300 YGQKQVKGSE YPRSYYKCTH TNCPVKKKVE RSHEGHITEI IYKGAHNHPK PAPSRRSGMG 360 SANPHADMQV DNHEHVEPQS GGEGDLGWAN AQKGNIAGVG NWKHDNLEVT SSATVIPEYG 420 NQSNNLQTQN GTHIDSGDAV DGSSTFSNEE EEDDQGTHGS VSLGYDAEGD ESESKRRKLE 480 SYATEMSGAT RAIREPRVVV QTTSEVDILD DGYRWRKYGQ KVVKGNPNPR SYYKCTNAGC 540 TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARSSSHVNAN ASNTASGQAS GLLQSHIHRP 600 ESSQVHNGMG RPSLASFNLP GRQQLGHPHG FSFGMNQPIN LSNLAMSGMG PSAQSKLPGM 660 LMNPFMAQQQ QHQQQQQQQQ HQHQQRAGNE MGFVLPKGEP NVDERGLNMH NGSSSMYQEI 720 MNHMPLGPHM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-36 | 293 | 570 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-36 | 293 | 570 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012571036.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142227 | 0.0 | BT142227.1 Medicago truncatula clone JCVI-FLMt-22I14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012571036.1 | 0.0 | probable WRKY transcription factor 2 isoform X1 | ||||
Swissprot | Q9FG77 | 1e-178 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A1S3E7Q7 | 0.0 | A0A1S3E7Q7_CICAR; probable WRKY transcription factor 2 isoform X1 | ||||
STRING | XP_004499679.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9524 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-179 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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