PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570710.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 459aa    MW: 52427.9 Da    PI: 4.8624
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570710.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-12271314755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +Er+RR+++N+++ +Lr+l+P  +      Kl+ a+iL  A+e++k+Lq
  XP_012570710.1 271 VAERKRRKKLNDRLYNLRSLVPRiS------KLDRASILGDAIEFVKDLQ 314
                     68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.0E-8987IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000836.01E-12263318No hitNo description
PROSITE profilePS5088815.294264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16267328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-16270327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-15270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9271314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.491391459IPR002912ACT domain
CDDcd048734.25E-4392455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MFSHSRIKAC DLLSQLNTSI STDSGIHAQT LLANQPNWLN YPNTLDPNTL QETINGTHVL  60
IPVPGGLVEL FVTKQVGEDQ QVLDFITSQC IVLVDQEGMN NSIGFNSMSN MQSNQVVCDE  120
NDGNNKTNNH FHPSDSLSLP PHDHISVMNF MQQFNYNYNY NQQNNRMRND ETFSEEYQGS  180
FFHDHENSNN NLVKPNTEEE HEHKSLMTEE QYVFVNPLDS KKNQEEEEKD LMKHVVGRSD  240
SMSDCSDQNE EEEDGKYRRR NGKGNQSKNL VAERKRRKKL NDRLYNLRSL VPRISKLDRA  300
SILGDAIEFV KDLQKQVKEL QDDLEENSDT ATESNCVINN QYVNGIQVEA DNKNVRKAEH  360
GYHVVGNGNE KQTQQMEAQV EVAQIDGNEY FVKVFCEHRA GGFVKLMEAL NSLGMDVLHA  420
TVTSHKGLVS NVFKVEKKES EIVEAEDVRE SLIELTRNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257278RRRNGKGNQSKNLVAERKRRKK
2272279ERKRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570710.10.0transcription factor ABORTED MICROSPORES-like
RefseqXP_027189166.10.0transcription factor ABORTED MICROSPORES-like
TrEMBLA0A1S3E4M20.0A0A1S3E4M2_CICAR; transcription factor ABORTED MICROSPORES-like
STRINGXP_004497179.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42253247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-102bHLH family protein