 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_012570672.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
| Family |
Trihelix |
| Protein Properties |
Length: 281aa MW: 32215.2 Da PI: 9.8929 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_012570672.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 50.6 | 5e-16 | 39 | 122 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ v +L+ea+++++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++++ s +p++++l+
XP_012570672.1 39 EWSEGAVSTLLEAYESKWILRNRAKLKGQDWEDVAKYVssrsNSTKSPKTQTQCKNKIESMKKRYRSESATSES------SAWPLYSRLD 122
5*************************************98777778889999***************9999986......5799999986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MNEKIETKDH NPQILNPKEE SPRKHIIIGS GGERLKRDEW SEGAVSTLLE AYESKWILRN 60
RAKLKGQDWE DVAKYVSSRS NSTKSPKTQT QCKNKIESMK KRYRSESATS ESSAWPLYSR 120
LDLLLRGTGQ LCSTIPTQHV TTTPSQLQHE DELETKSSDH VANKNPQDTD SSTPALYSEK 180
DERKCNKRRK KTENNNNRQK KEAMGIAESI RWLAEVVVRS EQTRMDTLKE IEKMRVEAEA 240
KRGEMEIKRT EIIANTQLEI ARIFANVNNK GVDSSLRIGR S
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC126006 | 1e-117 | AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence. |
| GenBank | BT147422 | 1e-117 | BT147422.1 Medicago truncatula clone JCVI-FLMt-14I11 unknown mRNA. |
| GenBank | CR956402 | 1e-117 | CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G54390.1 | 3e-94 | sequence-specific DNA binding transcription factors |
