PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012570417.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 232aa MW: 26666.5 Da PI: 6.6968

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012570417.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.2	5.7e-38	23	120	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC + C+lapyfp++++++f n+hklFG+ ++++++k++p++ r ++ms+++y+++ ra dPv G++g i++lq+q+e ++el XP_012570417.1 23 ACAACKYQRRKCGPTCILAPYFPHDRQQQFLNAHKLFGVGKITNMIKNVPPNLRGATMSTIMYQSDLRALDPVGGCYGQIQQLQSQIEFFNSELL 117 7***************************************************************************************9999987 PP DUF260 96 llk 98 + XP_012570417.1 118 FTL 120 665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.075	22	123	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.8E-35	23	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MNNNNHNNNH NNNSRNGNGT TQACAACKYQ RRKCGPTCIL APYFPHDRQQ QFLNAHKLFG 60 VGKITNMIKN VPPNLRGATM STIMYQSDLR ALDPVGGCYG QIQQLQSQIE FFNSELLFTL 120 QQLALFRGQV HNNNANRHHH HHPQYGIINN NIIPQPAQVL NQSQQHQHYA DEMSMSQPQQ 180 QQLHDDVNNL NLNPNYVPLQ EDLNTWVDSI PLSPLTLQDN RKEEEDEQEQ EQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-26	19	116	7	104	LOB family transfactor Ramosa2.1
5ly0_B	3e-26	19	116	7	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012570417.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570412.1	1e-172	LOB domain-containing protein 22-like isoform X1
Swissprot	Q9LRW1	3e-49	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A1S3E3P2	1e-170	A0A1S3E3P2_CICAR; LOB domain-containing protein 22-like isoform X1
STRING	AES67850	3e-75	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	7e-49	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]