PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570143.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 651aa    MW: 75424.7 Da    PI: 6.2801
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570143.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.12.2e-2169160190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk + +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  XP_012570143.1  69 EYYGNFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFAPVKKKPNGENHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHELL 160
                     59********************8888.********************9**********************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1969160IPR004330FAR1 DNA binding domain
PfamPF105514.6E-20292385IPR018289MULE transposase domain
PROSITE profilePS509669.903521556IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-6528553IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4531558IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MNSVPSKNLW IRRQQCPCGD WKCYITYEGD AEECSAAPES VKSDKTSSCG TMITPYVGMV  60
FKSDDEAFEY YGNFARKNGF SIRKERSRIS PQLGIYKRDF VCYRSGFAPV KKKPNGENHR  120
DRKSVRCGCD AKMYLSKEVV DGVSQWFVVQ FSNVHNHELL EDDQVRLLPA YRKIHEADQE  180
RILLLSKAGF PIHRIVKMLE LEKGIQGGHL PFLERDVRNF VQNRKKVVQE NEALLSEKRE  240
NDVLELLEVC KAMKEADVEF VYDFSVDENE KVENIAWSYG DSVNANAVFG DVVYFDTTYR  300
SITYGLLFGV WFGIDSCGRT IFFGCVLLQD ETPQSFSWAL QTFLRFMRGR CPQTILSDLD  360
PGLRDAIRSE FPGTKHIIPL WNILNKVSSW FSLPLGSRYA EFKSEFNALF HIENTEEFEL  420
QWSQMISVFG LGSDKHTDLL YSVRASWAQS YVIGYFLARM ATTAYSKSID SFLKGIFTEH  480
RCLRSFFEQQ ELSLAMQYAS SEMANGSYII RHFKRLDGER LVIWLAEDEQ IHCSCKEFES  540
SGILCRHAIH VLVMKNYFQL PDKYYLSRWR RECSLLVEDE HNNQSIIGGE WFQEYHSLAE  600
TLFSESLITK ERSDYVRKEL IKELNRILHE VRNLPETDGV CSMNMTVSPN S
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_012570143.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027186845.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X2
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A3Q7YBT70.0A0A3Q7YBT7_CICAR; Uncharacterized protein
STRINGXP_004486340.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]