PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569984.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 357aa MW: 39315.1 Da PI: 7.0354 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.5e-10 | 206 | 250 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + v+Y+k L XP_012569984.1 206 HSIAERLRRERIAERMKALQELVPSiN------KTDKAAMLDEIVDYVKFL 250 99***********************77......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.19E-11 | 199 | 255 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-16 | 199 | 260 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.729 | 201 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-15 | 203 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.5E-8 | 206 | 250 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-12 | 207 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MAGNCSSEGL GDDFFEQILA VPESGYGRNN NNSSNRGIVV DDHVLQLGST TNLRSGGMQL 60 PLGLNLEQSH HGFLRHQDTT RFVENVVDVE GNITNNNNHH RHLRLHDINT TSNSSPSSTL 120 HLDRDSMHMR GLFSTFGQLH TPTHAQPVRP MLPSPPPQPQ LHLHHQQHQQ QFQSQAPNPT 180 SVAAMPQPPG IRPRVRARRG QATDPHSIAE RLRRERIAER MKALQELVPS INKTDKAAML 240 DEIVDYVKFL RLQVKVLSMS RLGGAGAVAQ LVADVPVSAV EGEDVEGGAN QQAWTKWSND 300 GTEQQVAKLM EEDVGAAMQL LQSKALCIMP ISLASAIFRM PQSDSSTIIK PESNNHS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 215 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569984.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012569985.1 | 0.0 | transcription factor UNE12-like isoform X1 | ||||
Swissprot | O22768 | 1e-77 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A1S3E2K9 | 0.0 | A0A1S3E2K9_CICAR; transcription factor UNE12-like isoform X1 | ||||
STRING | XP_004496017.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11205 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 8e-67 | bHLH family protein |
Publications ? help Back to Top | |||
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