PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012569933.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GeBP | ||||||||
Protein Properties | Length: 399aa MW: 44922.6 Da PI: 5.0905 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 120.9 | 6.7e-38 | 93 | 188 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 k+fqrlw++eDei lLqG++d++a++g +++d+ fy+ +k++++++++ksqlveK+rrLK+K+++ vkk++sgke++f+++hdq +fe+s+ki XP_012569933.1 93 KMFQRLWTDEDEIELLQGFLDYNANRG-TYHNDTASFYDRIKSKLQLEFNKSQLVEKLRRLKRKYRNAVKKIDSGKEVNFKSPHDQATFEISHKI 186 58*************************.789**************************************************************** PP DUF573 96 Wg 97 W+ XP_012569933.1 187 WN 188 *8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-34 | 95 | 188 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MASFQNAVVL FKQEYIEDEL EEEYDEEEDD VVLGEPDEED DNNNKTEPPP STSSAITTVI 60 LALPNAATTV VDGSPEPKRQ HTEEKKSMDD PRKMFQRLWT DEDEIELLQG FLDYNANRGT 120 YHNDTASFYD RIKSKLQLEF NKSQLVEKLR RLKRKYRNAV KKIDSGKEVN FKSPHDQATF 180 EISHKIWNSA APVGNPVEDD DEINPNTNPN PNSGHTTPVK NEPIIEKKTA QSRKRSRTTA 240 STEEKRELNN SPLLNNDNHN YHKHNHNTNN NNSKNHDVVD GGDKCNGRQN VPGLIEETVK 300 SCLTPVLKEL ASSSSAMGSP YGFGGRGFGV GGFSMNTMPL GFLNLGSGEK VVDEKWRKQQ 360 ILELEVYSKR LELVQDEIKV ALDELRSSTG TGVRGVSKF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012569933.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012569933.1 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A1S3E3B2 | 0.0 | A0A1S3E3B2_CICAR; probable transcription factor At5g28040 | ||||
STRING | XP_004495782.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 3e-80 | DNA-binding storekeeper protein-related transcriptional regulator |